def build_hoc_section(self, cell, section, hocfile_obj, mta):
build_hoc_default(cell=cell,
section=section,
hocfile_obj=hocfile_obj,
mta=mta,
units={},
nrnsuffix=self.sim_chl_name)
def build_hoc_section(self, cell, section, hocfile_obj, mta):
build_hoc_default(cell=cell,
section=section,
hocfile_obj=hocfile_obj,
mta=mta,
units=self.units,
nrnsuffix=self.buildparameters.suffix)
def build_hoc_section(self, cell, section, hocfile_obj, mta):
build_hoc_default(cell=cell, section=section, hocfile_obj=hocfile_obj, mta=mta , units={}, nrnsuffix=self.nrnsuffix)
# ISSUE 'A': Hack around the reversal potential initialisation issue:
if self.chlData.iv_default_erev:
# Get the reversal potential out, takling care of the
# units (expected in 'mV') :
vrev = float(self.chlData.iv_default_erev)
if self.chlData.units == 'Physiological Units':
pass
elif self.chlData.units == 'SI Units':
vrev = vrev * 1000.
else:
assert False
tmpl_dict = hocfile_obj[MHocFileData.Cells][cell]
cell_name = tmpl_dict['cell_name']
section_indexer = tmpl_dict['section_indexer']
d = []
for s in cell.morphology:
d.append("""%s.internalsections [%d] { e%s=%f
}"""%(cell_name, section_indexer[s],
self.chlData.iv_ion,
vrev))
hocfile_obj.add_to_section(MHOCSections.InitCellMembranes, "\n".join(d))
def build_hoc_section(self, cell, section, hocfile_obj, mta):
#Units = dict([(p.symbol, pq.Quantity(1., p.get_dimension().simplified)) for p in self.eqnset.parameters])
build_hoc_default(cell=cell,
section=section,
hocfile_obj=hocfile_obj,
mta=mta,
units={},
nrnsuffix=self.nrnsuffix)
def build_hoc_section(self, cell, section, hocfile_obj, mta):
build_hoc_default(cell=cell, section=section, hocfile_obj=hocfile_obj, mta=mta , units={}, nrnsuffix=self.sim_chl_name)
def build_hoc_section(self, cell, section, hocfile_obj, mta):
#Units = dict([(p.symbol, pq.Quantity(1., p.get_dimension().simplified)) for p in self.eqnset.parameters])
build_hoc_default(cell=cell, section=section, hocfile_obj=hocfile_obj, mta=mta , units={}, nrnsuffix=self.nrnsuffix)
def build_hoc_section(self, cell, section, hocfile_obj, mta):
build_hoc_default(cell=cell, section=section, hocfile_obj=hocfile_obj, mta=mta , units=self.units, nrnsuffix=self.buildparameters.suffix)
