def exportToElphy(data_store_location,elphy_export_location,sheets=None,threshold=None):
import os.path
if not os.path.isdir(elphy_export_location):
if os.path.exists(elphy_export_location):
raise ValueError("The elphy export path is not a directory")
else:
os.makedirs(elphy_export_location)
setup_logging()
data_store = PickledDataStore(load=True,parameters=ParameterSet({'root_directory':data_store_location, 'store_stimuli' : False}))
ps = MP.parameter_value_list([MP.MozaikParametrized.idd(s) for s in data_store.get_stimuli()],'name')
for i,sn in enumerate(ps):
if sheets == None: sheets = data_store.sheets()
for shn in sheets:
dsv = param_filter_query(data_store,st_name = sn,sheet_name = shn)
if dsv.get_stimuli() == []: continue
varying_parameters = MP.varying_parameters([MP.MozaikParametrized.idd(s) for s in dsv.get_stimuli()])
segments,stimuli = MP.colapse(dsv.get_segments(),[MP.MozaikParametrized.idd(s) for s in dsv.get_stimuli()],parameter_list=['trial'],allow_non_identical_objects=True)
j = 0
for segs,st in zip(segments,stimuli):
# just make sure all segments are fully loaded, in future this should probably soreted out such that this line can be deleted
for s in segs: s.load_full()
# create file name:
filename = "name=" + sn + "#" + "sheet_name=" + shn
for pn in varying_parameters:
if pn != "trial":
filename += "#" + str(pn) + "=" + str(getattr(MP.MozaikParametrized.idd(st),pn))
path = os.path.join(elphy_export_location,filename+".dat")
# if the threshold is defined add spikes into Vms
if threshold != None:
for seg in segs : addSpikes(seg,threshold)
createFileFromSegmentList( segs, path)
print "Finished saving file %d/%d for sheet %s and %d-th stimulus" % (j+1,len(segments),shn,i)
# release segments from memory
for s in segs: s.release()
j = j + 1
print "Finished saving %d/%d stimulus" % (i+1,len(ps))
def exportToElphy(data_store_location,
elphy_export_location,
sheets=None,
threshold=None):
import os.path
if not os.path.isdir(elphy_export_location):
if os.path.exists(elphy_export_location):
raise ValueError("The elphy export path is not a directory")
else:
os.makedirs(elphy_export_location)
setup_logging()
data_store = PickledDataStore(load=True,
parameters=ParameterSet({
'root_directory':
data_store_location,
'store_stimuli':
False
}))
ps = MP.parameter_value_list(
[MP.MozaikParametrized.idd(s) for s in data_store.get_stimuli()],
'name')
for i, sn in enumerate(ps):
if sheets == None: sheets = data_store.sheets()
for shn in sheets:
dsv = param_filter_query(data_store, st_name=sn, sheet_name=shn)
if dsv.get_stimuli() == []: continue
varying_parameters = MP.varying_parameters(
[MP.MozaikParametrized.idd(s) for s in dsv.get_stimuli()])
segments, stimuli = MP.colapse(
dsv.get_segments(),
[MP.MozaikParametrized.idd(s) for s in dsv.get_stimuli()],
parameter_list=['trial'],
allow_non_identical_objects=True)
j = 0
for segs, st in zip(segments, stimuli):
# just make sure all segments are fully loaded, in future this should probably soreted out such that this line can be deleted
for s in segs:
s.load_full()
# create file name:
filename = "name=" + sn + "#" + "sheet_name=" + shn
for pn in varying_parameters:
if pn != "trial":
filename += "#" + str(pn) + "=" + str(
getattr(MP.MozaikParametrized.idd(st), pn))
path = os.path.join(elphy_export_location, filename + ".dat")
# if the threshold is defined add spikes into Vms
if threshold != None:
for seg in segs:
addSpikes(seg, threshold)
createFileFromSegmentList(segs, path)
print "Finished saving file %d/%d for sheet %s and %d-th stimulus" % (
j + 1, len(segments), shn, i)
# release segments from memory
for s in segs:
s.release()
j = j + 1
print "Finished saving %d/%d stimulus" % (i + 1, len(ps))
