self.clear()
self.update()
def integrate(self, ancestor, name=None):
msa = integrate_ancestor_msa(self, ancestor)
self.msaview_name = Component.integrate(self, msa, name)
self.msa = msa
return self.msaview_name
class CScoreSetting(ComponentSetting):
component_class = CScore
presets.register_component_defaults(CScoreSetting)
presets.add_builtin('gradient:cscore_default',
Gradient.from_colorstops((0.0, presets.get_value('color:clustalx_red')),
(1.0, presets.get_value('color:clustalx_yellow')),
(1.0, Color.from_str("#8ae3d4850000"))))
class CScoreRenderer(Renderer):
__gproperties__ = dict(
gradient = (
gobject.TYPE_PYOBJECT,
'gradient',
'the colors for different bar heights in the plot',
gobject.PARAM_READWRITE),
cscore = (
gobject.TYPE_PYOBJECT,
'cscore',
'the component that computes the cscores',
gobject.PARAM_READWRITE))
def set_options(self, options):
Action.set_options(self, options)
self.params['pymolscript'] = presets.get_value('pymolscript:' + self.params['pymolscript'])