input_level_fname = None
input_ref_gm_seg = None
compute_ratio = False
if seg_param.debug:
print '\n*** WARNING: DEBUG MODE ON ***\n'
fname_input = model_param.path_model + "/errsm_34.nii.gz"
fname_input = model_param.path_model + "/errsm_34_seg_in.nii.gz"
else:
parser = get_parser()
arguments = parser.parse(sys.argv[1:])
input_target_fname = arguments["-i"]
input_sc_seg_fname = arguments["-s"]
if "-model" in arguments:
model_param.path_model = arguments["-model"]
model_param.todo_model = 'load'
seg_param.output_path = sct.slash_at_the_end(arguments["-ofolder"], slash=1)
if "-t2" in arguments:
input_t2_data = arguments["-t2"]
if "-vert" in arguments:
input_level_fname = arguments["-vert"]
if "-use-levels" in arguments:
model_param.use_levels = bool(int(arguments["-use-levels"]))
if "-weight" in arguments:
model_param.weight_gamma = arguments["-weight"]
if "-denoising" in arguments:
seg_param.target_denoising = bool(int(arguments["-denoising"]))
if "-normalize" in arguments:
seg_param.target_normalization = bool(int(arguments["-normalize"]))
if "-means" in arguments:
seg_param.target_means = arguments["-means"]
