def test_extract_mutations_from_lines_to_dict_w_spans(self):
"""extract_mutations_from_lines_to_dict: functions with spans """
expected = dict([('id1',{PointMutation(64,'A','G'):[(4,24)]}),\
('id2',{PointMutation(42,'W','A'):[(15,19),(21,29)],\
PointMutation(88,'G','Y'):[(35,39),(41,49)]}),\
('id3',{}),('id4',{}),('id5',{})])
actual = extract_mutations_from_lines_to_dict(\
self.fake_input_file,self.mf,store_spans=True)
self.assertEqual(actual,expected)
# Test with empty list passed in
self.assertEqual({},extract_mutations_from_lines_to_dict([],self.mf))
def test_extract_mutations_from_lines_to_dict(self):
"""extract_mutations_from_lines_to_dict: functions w/o spans """
expected = dict([('id1',{PointMutation(64,'A','G'):1}),\
('id2',{PointMutation(42,'W','A'):2,\
PointMutation(88,'G','Y'):2}),\
('id3',{}),('id4',{}),('id5',{})])
actual = extract_mutations_from_lines_to_dict(\
self.fake_input_file,self.mf,store_spans=False)
self.assertEqual(actual,expected)
# Test with empty list passed in
self.assertEqual({},extract_mutations_from_lines_to_dict([],self.mf))
def test_extract_mutations_from_lines_to_dict(self):
"""extract_mutations_from_lines_to_dict: functions w/o spans """
expected = dict(
[
("id1", {PointMutation(64, "A", "G"): 1}),
("id2", {PointMutation(42, "W", "A"): 2, PointMutation(88, "G", "Y"): 2}),
("id3", {}),
("id4", {}),
("id5", {}),
]
)
actual = extract_mutations_from_lines_to_dict(self.fake_input_file, self.mf, store_spans=False)
self.assertEqual(actual, expected)
# Test with empty list passed in
self.assertEqual({}, extract_mutations_from_lines_to_dict([], self.mf))
def test_extract_mutations_from_lines_to_dict_w_spans(self):
"""extract_mutations_from_lines_to_dict: functions with spans """
expected = dict(
[
("id1", {PointMutation(64, "A", "G"): [(4, 24)]}),
(
"id2",
{
PointMutation(42, "W", "A"): [(15, 19), (21, 29)],
PointMutation(88, "G", "Y"): [(35, 39), (41, 49)],
},
),
("id3", {}),
("id4", {}),
("id5", {}),
]
)
actual = extract_mutations_from_lines_to_dict(self.fake_input_file, self.mf, store_spans=True)
self.assertEqual(actual, expected)
# Test with empty list passed in
self.assertEqual({}, extract_mutations_from_lines_to_dict([], self.mf))
