def declare_entities(self, model):
uri = model.declare_individual("GO:0032991")
model.writer.writer.graph.add((uri, RDFS.label, Literal(str(self.name))))
for entity in self.entities:
entity_full_id = NamingConvention.full_id(entity)
entity_uri = model.declare_individual(entity_full_id)
part_of_stmt = model.writer.emit(uri, HAS_PART, entity_uri)
model.add_axiom(part_of_stmt)
"uri BFO:0000051 entity_uri"
return uri
def uri_in_model(self, model):
graph = model.writer.writer.graph
complex_term = "GO:0032991"
complex_uris = model.uri_list_for_individual(complex_term)
for c_uri in complex_uris:
found_entities = [] # Collect connected entities for set comparison
for entity in self.entities:
for entity_uri in model.uri_list_for_individual(NamingConvention.full_id(entity)):
if (c_uri, HAS_PART, entity_uri) in graph:
found_entities.append(entity)
if set(self.entities) == set(found_entities):
print(c_uri)
return c_uri
def full_id_b(self):
return NamingConvention.full_id(self.id_b)