def narps():
dataurl = os.environ['DATA_URL']
basedir = '/tmp/data'
if not os.path.exists(basedir):
os.mkdir(basedir)
narps = Narps(basedir, dataurl=dataurl)
narps.write_data()
return (narps)
narps.get_resampled_images()
print("creating concatenated thresholded images...")
narps.create_concat_images(datatype='resampled', imgtypes=['thresh'])
print("checking image values...")
image_metadata_df = narps.check_image_values()
print("creating rectified images...")
narps.create_rectified_images()
print('Creating overlap(mean) images for thresholded maps...')
narps.create_mean_thresholded_images()
print('converting to z-scores')
narps.convert_to_zscores()
print("creating concatenated zstat images...")
narps.create_concat_images(datatype='zstat',
imgtypes=['unthresh'],
create_voxel_map=True)
print("computing image stats...")
narps.compute_image_stats()
print('estimating image smoothness')
smoothness_df = narps.estimate_smoothness()
# save directory structure
narps.write_data()
def narps(basedir):
narps = Narps(basedir)
narps.write_data()
return (narps)