def run_script(script, only_tell=False, **kwargs):
#if kwargs:
# script = re.sub(
# '|'.join(re.escape(name) for name in kwargs),
# lambda match: R_literal(kwargs[match.group(0)]),
# script
# )
script = ''.join([
key + ' <- ' + R_literal(kwargs[key]) + '\n'
for key in kwargs
]) + script
if only_tell:
print script
return
process = legion.subprocess_Popen(
['Rscript', '-'],
bufsize=1<<24,
stdin=subprocess.PIPE,
close_fds=True,
)
process.stdin.write(script)
process.stdin.close()
assert 0 == process.wait(), 'R failed'
def run(args, stdin=None, stdout=subprocess.PIPE, stderr=None):
return legion.subprocess_Popen(
args,
bufsize=1 << 24,
stdin=stdin,
stdout=stdout,
stderr=stderr,
close_fds=True,
)
def run(args, stdin=None, stdout=subprocess.PIPE, stderr=None):
return legion.subprocess_Popen(
args,
bufsize=1<<24,
stdin=stdin,
stdout=stdout,
stderr=stderr,
close_fds=True,
)
def __init__(self, filename, command):
self.command = command
f_out = open(filename, 'wb')
self.process = legion.subprocess_Popen(
command,
stdin=subprocess.PIPE,
stdout=f_out,
# bufsize = 1<<24,
close_fds=True)
f_out.close()
def __init__(self, filename, command):
self.command = command
f_out = open(filename,'wb')
self.process = legion.subprocess_Popen(
command,
stdin = subprocess.PIPE,
stdout = f_out,
# bufsize = 1<<24,
close_fds = True
)
f_out.close()
