def nonzero_section_lengths(neuron, threshold=0.0):
'''Check presence of neuron sections with length not above threshold
Arguments:
neuron: Neuron object whose segments will be tested
threshold: value above which a section length is considered to be non-zero
Return: list of ids of first point in bad sections
'''
l = [[s for s in val_iter(isection(t)) if section_length(s) <= threshold]
for t in neuron.neurites]
return [i[0][COLS.ID] for i in chain(*l)]
def nonzero_section_lengths(neuron, threshold=0.0):
'''Check presence of neuron sections with length not above threshold
Arguments:
neuron: Neuron object whose segments will be tested
threshold: value above which a section length is considered to be non-zero
Return: list of ids of first point in bad sections
'''
l = [[s for s in val_iter(isection(t))
if section_length(s) <= threshold]
for t in neuron.neurites]
return [i[0][COLS.ID] for i in chain(*l)]
def length(section):
'''Return the length of a section'''
return mm.section_length(section)
