def test_get_nonmonotonic_neurites():
n = load_neuron(os.path.join(SWC_PATH, 'Neuron.swc'))
nt.assert_equal(len(mt.get_nonmonotonic_neurites(n)), 4)
_make_monotonic(n)
nt.assert_equal(len(mt.get_nonmonotonic_neurites(n)), 0)
def test_get_nonmonotonic_neurites():
n = load_neuron(os.path.join(SWC_PATH, 'Neuron.swc'))
nt.assert_equal(len(mt.get_nonmonotonic_neurites(n)), 4)
_make_monotonic(n)
nt.assert_equal(len(mt.get_nonmonotonic_neurites(n)), 0)
def has_all_monotonic_neurites(neuron, tol=1e-6):
'''Check that a neuron has no neurites that are not monotonic
Argument:
neuron : The neuron object to test
tol : the tolerance for testing monotonicity
'''
return CheckResult(len(get_nonmonotonic_neurites(neuron, tol)) == 0)
def has_all_monotonic_neurites(neuron, tol=1e-6):
'''Check that a neuron has only neurites that are monotonic
Arguments:
neuron(Neuron): The neuron object to test
tol(float): tolerance
Returns:
CheckResult with result
'''
return CheckResult(len(get_nonmonotonic_neurites(neuron, tol)) == 0)
def has_all_monotonic_neurites(neuron, tol=1e-6):
'''Check that a neuron has only neurites that are monotonic
Arguments:
neuron(Neuron): The neuron object to test
tol(float): tolerance
Returns:
CheckResult with result
'''
return CheckResult(len(get_nonmonotonic_neurites(neuron, tol)) == 0)
def test_get_nonmonotonic_neurites():
n = load_neuron(Path(SWC_PATH, 'Neuron.swc'))
assert len(mt.get_nonmonotonic_neurites(n)) == 4
_make_monotonic(n)
assert len(mt.get_nonmonotonic_neurites(n)) == 0