def generate(self):
'''Generate dendrogram
'''
offsets = (0., 0.)
n_previous = 0
# set recursion limit with respect to
# the max number of nodes on the trees
old_depth = sys.getrecursionlimit()
max_depth = old_depth if old_depth > self._max_rec_depth else self._max_rec_depth
# TODO: This should be fixed so we don't set sys.setrecursionlimit at all
sys.setrecursionlimit(max_depth)
if isinstance(self._obj, Neurite):
max_diameter = _max_diameter(self._obj.root_node)
dummy_section = Tree()
dummy_section.add_child(self._obj.root_node)
self._generate_dendro(dummy_section, (max_diameter, 0.), offsets)
self._groups.append((0., self._n))
self._dims.append(self._max_dims)
else:
for neurite in self._obj.neurites:
neurite = neurite.root_node
max_diameter = _max_diameter(neurite)
dummy_section = Tree()
dummy_section.add_child(neurite)
self._generate_dendro(dummy_section, (max_diameter, 0.),
offsets)
# store in trees the indices for the slice which corresponds
# to the current neurite
self._groups.append((n_previous, self._n))
# store the max dims per neurite for view positioning
self._dims.append(self._max_dims)
# reset the max dimensions for the next tree in line
self._max_dims = [0., 0.]
# keep track of the next tree start index in list
n_previous = self._n
# set it back to its initial value
sys.setrecursionlimit(old_depth)
def generate(self):
'''Generate dendrogram
'''
offsets = (0., 0.)
n_previous = 0
# set recursion limit with respect to
# the max number of nodes on the trees
old_depth = sys.getrecursionlimit()
max_depth = old_depth if old_depth > self._max_rec_depth else self._max_rec_depth
# TODO: This should be fixed so we don't set sys.setrecursionlimit at all
sys.setrecursionlimit(max_depth)
if isinstance(self._obj, Neurite):
max_diameter = _max_diameter(self._obj.root_node)
dummy_section = Tree()
dummy_section.add_child(self._obj.root_node)
self._generate_dendro(dummy_section, (max_diameter, 0.), offsets)
self._groups.append((0, self._n))
self._dims.append(self._max_dims)
else:
for neurite in self._obj.neurites:
neurite = neurite.root_node
max_diameter = _max_diameter(neurite)
dummy_section = Tree()
dummy_section.add_child(neurite)
self._generate_dendro(dummy_section, (max_diameter, 0.), offsets)
# store in trees the indices for the slice which corresponds
# to the current neurite
self._groups.append((n_previous, self._n))
# store the max dims per neurite for view positioning
self._dims.append(self._max_dims)
# reset the max dimensions for the next tree in line
self._max_dims = [0., 0.]
# keep track of the next tree start index in list
n_previous = self._n
# set it back to its initial value
sys.setrecursionlimit(old_depth)
