def test_has_finite_length_segments_good_data():
files = [os.path.join(SWC_PATH, f)
for f in ['Neuron.swc',
'sequential_trunk_off_0_16pt.swc',
'sequential_trunk_off_1_16pt.swc',
'sequential_trunk_off_42_16pt.swc']]
for f in files:
ok, ids = check.has_all_finite_length_segments(load_data(f))
nt.ok_(ok)
nt.ok_(len(ids) == 0)
def test_has_finite_length_segments_good_data():
files = [
os.path.join(SWC_PATH, f) for f in [
'Neuron.swc', 'sequential_trunk_off_0_16pt.swc',
'sequential_trunk_off_1_16pt.swc',
'sequential_trunk_off_42_16pt.swc'
]
]
for f in files:
ok, ids = check.has_all_finite_length_segments(load_data(f))
nt.ok_(ok)
nt.ok_(len(ids) == 0)
def test_has_finite_length_segments_bad_data():
files = [
os.path.join(SWC_PATH, f) for f in [
'Neuron_zero_length_segments.swc', 'Single_apical.swc',
'Single_basal.swc', 'Single_axon.swc'
]
]
bad_segs = [[(4, 5), (215, 216), (426, 427), (637, 638)], [(4, 5)],
[(4, 5)], [(4, 5)]]
for i, f in enumerate(files):
ok, ids = check.has_all_finite_length_segments(load_data(f))
nt.ok_(not ok)
nt.assert_equal(ids, bad_segs[i])
def test_has_finite_length_segments_bad_data():
files = [os.path.join(SWC_PATH, f)
for f in ['Neuron_zero_length_segments.swc',
'Single_apical.swc',
'Single_basal.swc',
'Single_axon.swc']]
bad_segs = [[(4, 5), (215, 216),
(426, 427), (637, 638)],
[(4, 5)],
[(4, 5)],
[(4, 5)]]
for i, f in enumerate(files):
ok, ids = check.has_all_finite_length_segments(load_data(f))
nt.ok_(not ok)
nt.assert_equal(ids, bad_segs[i])
