def run_step(self, sblink=False):
millis = int(round(time.time() * 1000))
self.step += 1
self.time_flag[self.step] = millis
self.notify_observers(self.step)
config_list = self.CS_config[self.step]
print(config_list[0])
# take the row
# turn on or off all the stimuli
# turn on or off the delivery
if config_list[2] == 0:
if self.infuse == True:
new_era.stop_pump(self.pser, self.pump)
self.infuse = False
elif config_list[2] == 1:
if self.infuse == False:
new_era.set_rate(self.pser, self.pump, flowrate)
new_era.run_all(self.pser)
self.infuse = True
if config_list[1] == 0:
self.ard.setLow(pin_LED) # keep the LED off
time.sleep(config_list[0])
elif config_list[1] == 1:
if sblink:
self.blink(config_list[0])
else:
self.ard.setHigh(pin_LED)
time.sleep(config_list[0])
def run_step(self, sblink=False):
millis = int(round(time.time() * 1000))
self.step += 1
self.time_flag[self.step] = millis
self.notify_observers(self.step)
config_list = self.CS_config[self.step]
print(config_list[0])
# take the row
# turn on or off all the stimuli
# turn on or off the delivery
if config_list[2] == 0:
if (self.infuse == True):
new_era.stop_pump(self.pser, self.pump)
self.infuse = False
elif config_list[2] == 1:
if (self.infuse == False):
new_era.set_rate(self.pser, self.pump, flowrate)
new_era.run_all(self.pser)
self.infuse = True
if config_list[1] == 0:
self.ard.setLow(pin_LED) # keep the LED off
time.sleep(config_list[0])
elif config_list[1] == 1:
if sblink:
self.blink(config_list[0])
else:
self.ard.setHigh(pin_LED)
time.sleep(config_list[0])
def prime_pumps(self,pump):
if self.curr_state == 'Stopped':
if pump not in self.prime_state: # currently not priming
new_era.prime(self.ser,pump)
self.commandbar.setText('Last command: priming pump %i'%pump)
self.statusbar.setText('Status: Priming')
self.prime_state.add(pump)# add to prime state
else: # currently priming
new_era.stop_pump(self.ser,pump)
self.commandbar.setText('Last command: stopped pump %i'%pump)
self.prime_state.remove(pump)# remove prime state
if len(self.prime_state)==0: self.statusbar.setText('Status: Stopped')# if this is the last one, show status=Stopped
actual_rates = new_era.get_rates(self.ser,self.rates.keys())
self.currflow[pump].setText(actual_rates[pump]+' ul/hr')
else:
self.commandbar.setText("Can't prime pump while running")
self.prime_btns[pump].setChecked(0)
def prime_pumps(self, pump):
if self.curr_state == 'Stopped':
if pump not in self.prime_state: # currently not priming
new_era.prime(self.ser, pump)
self.commandbar.setText('Last command: priming pump %i' % pump)
self.statusbar.setText('Status: Priming')
self.prime_state.add(pump) # add to prime state
else: # currently priming
new_era.stop_pump(self.ser, pump)
self.commandbar.setText('Last command: stopped pump %i' % pump)
self.prime_state.remove(pump) # remove prime state
if len(self.prime_state) == 0:
self.statusbar.setText(
'Status: Stopped'
) # if this is the last one, show status=Stopped
actual_rates = new_era.get_rates(self.ser, self.rates.keys())
self.currflow[pump].setText(actual_rates[pump] + ' ul/hr')
else:
self.commandbar.setText("Can't prime pump while running")
self.prime_btns[pump].setChecked(0)
def terminate_step(self):
# terminate a step
self.ard.setLow(pin_LED)
self.ard.analogWrite(pin_Servo, 0)
new_era.stop_pump(self.pser, self.pump)
def terminate_step(self):
# terminate a step
self.ard.setLow(pin_LED)
self.ard.analogWrite(pin_Servo, 0)
new_era.stop_pump(self.pser, self.pump)
def stop_pump(self):
new_era.stop_pump(self.ser, self.pump)
