def read_image(self, filename):
if self.get_image_type() == 'CBF':
import pycbf
cbf = pycbf.cbf_handle_struct()
cbf.read_file(str(filename), pycbf.MSG_DIGEST)
cbf.select_datablock(0)
cbf.select_category(0)
cbf.select_column(2)
imsize = cbf.get_image_size(0)
return np.fromstring(cbf.get_integerarray_as_string(),np.int32).reshape(imsize)
else:
from nexpy.readers.tifffile import tifffile as TIFF
return TIFF.imread(filename)
def read_image(self, filename):
if self.get_image_type() == 'CBF':
import pycbf
cbf = pycbf.cbf_handle_struct()
cbf.read_file(str(filename), pycbf.MSG_DIGEST)
cbf.select_datablock(0)
cbf.select_category(0)
cbf.select_column(2)
imsize = cbf.get_image_size(0)
return np.fromstring(cbf.get_integerarray_as_string(),
np.int32).reshape(imsize)
else:
from nexpy.readers.tifffile import tifffile as TIFF
return TIFF.imread(filename)
def get_data(self):
self.import_file = self.get_filename()
try:
from nexpy.readers.tifffile import tifffile as TIFF
im = TIFF.imread(self.import_file)
z = NXfield(im, name='z')
y = NXfield(range(z.shape[0]), name='y')
x = NXfield(range(z.shape[1]), name='x')
except ImportError:
import Image
im = Image.open(self.import_file)
dtype = np.dtype(np.uint16)
if im.mode == "I;32" or im.mode == "I":
dtype = np.dtype(np.uint32)
z = NXfield(np.array(im.getdata(), dtype=dtype), name='z')
y = NXfield(range(im.size[1]), name='y')
x = NXfield(range(im.size[0]), name='x')
return NXentry(NXdata(z, (y, x)))
def get_data(self):
self.import_file = self.get_filename()
try:
from nexpy.readers.tifffile import tifffile as TIFF
im = TIFF.imread(self.import_file)
z = NXfield(im, name='z')
y = NXfield(range(z.shape[0]), name='y')
x = NXfield(range(z.shape[1]), name='x')
except ImportError:
import Image
im = Image.open(self.import_file)
dtype = np.dtype(np.uint16)
if im.mode == "I;32" or im.mode == "I":
dtype=np.dtype(np.uint32)
z = NXfield(np.array(im.getdata(),dtype=dtype),
name='z')
y = NXfield(range(im.size[1]), name='y')
x = NXfield(range(im.size[0]), name='x')
return NXentry(NXdata(z,(y,x)))
