def test_API_promise_to_have():
view = nv.demo()
# Structure
structure = nv.Structure()
structure.get_structure_string
nt.assert_true(hasattr(structure, 'id'))
nt.assert_true(hasattr(structure, 'ext'))
nt.assert_true(hasattr(structure, 'params'))
# Widget
nv.NGLWidget._set_coordinates
nv.NGLWidget._set_initial_structure
nv.NGLWidget.add_component
nv.NGLWidget.add_trajectory
nv.NGLWidget.coordinates_dict
nv.NGLWidget.set_representations
nv.NGLWidget.clear
nv.NGLWidget.center
nv._get_notebook_info()
# display
display.Javascript(jsutils.js_clean_error_output)
display.display(view.player.repr_widget)
view.player._display()
def test_API_promise_to_have():
# Structure
structure = nv.Structure()
structure.get_structure_string
nt.assert_true(hasattr(structure, 'id'))
nt.assert_true(hasattr(structure, 'ext'))
nt.assert_true(hasattr(structure, 'params'))
# Widget
nv.NGLWidget._set_coordinates
nv.NGLWidget._set_initial_structure
nv.NGLWidget.add_component
nv.NGLWidget.add_trajectory
nv.NGLWidget.coordinates_dict
nv.NGLWidget.set_representations
nv.NGLWidget.clear
nv.NGLWidget.center
def func_0():
nv.Structure().get_structure_string()
def test_API_promise_to_have():
# for Jupyter notebook extension
nv._jupyter_nbextension_paths()
view = nv.demo()
# trigger _set_size
with patch.object(view, '_remote_call') as mock_call:
view.layout.width = '100px'
view.layout.height = '500px'
mock_call.assert_called_with('setSize',
args=['', '500px'],
target='Widget')
# Structure
structure = nv.Structure()
structure.get_structure_string
assert hasattr(structure, 'id')
assert hasattr(structure, 'ext')
assert hasattr(structure, 'params')
# Widget
nv.NGLWidget._set_coordinates
nv.NGLWidget.add_component
nv.NGLWidget.add_trajectory
nv.NGLWidget._coordinates_dict
nv.NGLWidget.set_representations
nv.NGLWidget.clear
nv.NGLWidget.center
# add component
view.add_component('rcsb://1tsu.pdb')
view.add_pdbid('1tsu')
# display
js_utils.clean_error_output()
display(view.player.widget_repr)
view.player._display()
view._display_image()
# show
try:
nv.show_pdbid('1tsu')
except:
pass
nv.show_url('https://dummy.pdb')
# other backends will be tested in other sections
# constructor
ngl_traj = nv.PyTrajTrajectory(pt.datafiles.load_ala3())
nv.NGLWidget(ngl_traj, parameters=dict(background_color='black'))
nv.NGLWidget(ngl_traj, representations=[dict(type='cartoon', params={})])
view.parameters
view.camera
view.camera = 'perspective'
view._request_stage_parameters()
view._ngl_repr_dict = REPR_DICT
view._handle_repr_dict_changed(dict(new=dict(c0={})))
# dummy
class DummWidget():
value = ''
view.player.picked_widget = DummWidget()
view._update_background_color(change=dict(new='blue'))
tab = view.player._display()
view.player.widget_repr = view.player._make_widget_repr()
view._handle_n_components_changed(change=dict(new=2, old=1))
view._handle_n_components_changed(change=dict(new=1, old=1))
view._handle_n_components_changed(change=dict(new=1, old=0))
view.on_loaded(change=dict(new=True))
view.on_loaded(change=dict(new=False))
view._first_time_loaded = False
view
view._first_time_loaded = True
view
view._init_gui = True
view
view._theme = 'dark'
view
view.display(gui=True, style='ngl')
view.display(gui=False)
view.display(gui=True, style='ipywidgets')
view._set_sync_camera([view])
view._set_unsync_camera([view])
view._set_selection('.CA')
view.color_by('atomindex')
representations = [dict(type='cartoon', params=dict())]
view.representations = representations
repr_parameters = dict(opacity=0.3, params=dict())
view.update_representation(parameters=repr_parameters)
view._remove_representation()
view.clear()
view.add_representation('surface', selection='*', useWorker=True)
view.add_representation('surface', selection='*', component=1)
view.center()
view._on_render_image(change=dict(new='xyz'))
view.render_image()
view.render_image(frame=2)
view.download_image()
assert view._dry_run(view._set_sync_camera,
[view])['methodName'] == 'setSyncCamera'
msg = dict(type='request_frame', data=dict())
view._ngl_handle_msg(view, msg=msg, buffers=[])
msg = dict(type='repr_parameters', data=dict(name='hello'))
view._ngl_handle_msg(view, msg=msg, buffers=[])
view.loaded = True
msg = dict(type='request_loaded', data=True)
view._ngl_handle_msg(view, msg=msg, buffers=[])
view.loaded = False
msg = dict(type='request_loaded', data=True)
view._ngl_handle_msg(view, msg=msg, buffers=[])
msg = dict(type='all_reprs_info', data=REPR_DICT)
view._ngl_handle_msg(view, msg=msg, buffers=[])
msg = dict(type='stage_parameters', data=dict())
view._ngl_handle_msg(view, msg=msg, buffers=[])
# test negative frame (it will be set to self.count - 1)
view.frame = -1
msg = dict(type='request_frame', data=dict())
# async_message
msg = {'type': 'async_message', 'data': 'ok'}
view._ngl_handle_msg(view, msg, [])
# render_image
r = view.render_image()
Widget.widgets[r.model_id] = r
msg = {'type': 'image_data', 'ID': r.model_id, 'data': b'YmxhIGJsYQ=='}
view._ngl_handle_msg(view, msg, [])
view.loaded = True
view.show_only([
0,
])
view._js_console()
view._get_full_params()
# iter
for c in view:
assert isinstance(c, nv.widget.ComponentViewer)
def test_API_promise_to_have():
# for Jupyter notebook extension
nv._jupyter_nbextension_paths()
view = nv.demo()
# Structure
structure = nv.Structure()
structure.get_structure_string
assert hasattr(structure, 'id')
assert hasattr(structure, 'ext')
assert hasattr(structure, 'params')
# Widget
nv.NGLWidget._set_coordinates
nv.NGLWidget.add_component
nv.NGLWidget.add_trajectory
nv.NGLWidget.coordinates_dict
nv.NGLWidget.set_representations
nv.NGLWidget.clear
nv.NGLWidget.center
# add component
view.add_component('rcsb://1tsu.pdb')
view.add_pdbid('1tsu')
# display
js_utils.clean_error_output()
display.display(view.player.widget_repr)
view.player._display()
view._display_image()
# show
try:
nv.show_pdbid('1tsu')
except:
pass
nv.show_url('https://dummy.pdb')
# other backends will be tested in other sections
# constructor
ngl_traj = nv.PyTrajTrajectory(pt.datafiles.load_ala3())
nv.NGLWidget(ngl_traj, parameters=dict(background_color='black'))
nv.NGLWidget(ngl_traj, representations=[dict(type='cartoon')])
view.parameters
view.camera
view.camera = 'perspective'
view._request_stage_parameters()
view._repr_dict = REPR_DICT
view._handle_repr_dict_changed(dict(new=dict(c0={})))
# dummy
class DummWidget():
value = ''
view.player.picked_widget = DummWidget()
view._update_background_color(change=dict(new='blue'))
view.on_update_dragged_file(change=dict(new=2, old=1))
view.on_update_dragged_file(change=dict(new=1, old=1))
tab = view.player._display()
view.player.widget_repr = view.player._make_widget_repr()
view._handle_n_components_changed(change=dict(new=2, old=1))
view._handle_n_components_changed(change=dict(new=1, old=1))
view._handle_n_components_changed(change=dict(new=1, old=0))
view.on_loaded(change=dict(new=True))
view.on_loaded(change=dict(new=False))
view._refresh_render()
view.sync_view()
view._first_time_loaded = False
view._ipython_display_()
view._first_time_loaded = True
view._ipython_display_()
view._init_gui = True
view._ipython_display_()
view._theme = 'dark'
view._ipython_display_()
view.display(gui=True)
view.display(gui=False)
view.display(gui=True, use_box=True)
view._set_draggable(True)
view._set_draggable(False)
view._set_sync_frame()
view._set_sync_camera()
view._set_spin([0, 1, 0], 0.5)
view._set_selection('.CA')
view.color_by('atomindex')
representations = [dict(type='cartoon', params=dict())]
view.representations = representations
repr_parameters = dict(opacity=0.3, params=dict())
view.update_representation(parameters=repr_parameters)
view._remove_representation()
view.clear()
view.add_representation('surface', selection='*', useWorker=True)
view.add_representation('surface', selection='*', component=1)
view.center()
view._hold_image = True
view._on_render_image(change=dict(new=u'xyz'))
view._hold_image = False
view._on_render_image(change=dict(new=u'xyz'))
view.render_image()
view.render_image(frame=2)
view.download_image()
msg = dict(type='request_frame', data=dict())
view._ngl_handle_msg(view, msg=msg, buffers=[])
msg = dict(type='repr_parameters', data=dict(name='hello'))
view._ngl_handle_msg(view, msg=msg, buffers=[])
view.loaded = True
msg = dict(type='request_loaded', data=True)
view._ngl_handle_msg(view, msg=msg, buffers=[])
view.loaded = False
msg = dict(type='request_loaded', data=True)
view._ngl_handle_msg(view, msg=msg, buffers=[])
msg = dict(type='all_reprs_info', data=REPR_DICT)
view._ngl_handle_msg(view, msg=msg, buffers=[])
msg = dict(type='stage_parameters', data=dict())
view._ngl_handle_msg(view, msg=msg, buffers=[])
# test negative frame (it will be set to self.count - 1)
view.frame = -1
msg = dict(type='request_frame', data=dict())
view.loaded = True
view.show_only([
0,
])
view._js_console()
view._get_full_params()
view.detach(split=False)
view.detach(split=True)
# view._set_place_proxy(HBox())
# iter
for c in view:
assert isinstance(c, nv.widget.ComponentViewer)
