def __init__(self, num, fname, verbose=None):
sys.stderr.write('Note: MismatchDbSNP is considered *experimental*\n')
self.num = int(num)
self.fname = fname
self.dbsnp = DBSNP(fname)
if verbose == 'verbose':
self.verbose = True
else:
self.verbose = False
def __init__(self, num, refname, dbsnpname):
sys.stderr.write('Note: MismatchRefDbSNP is considered *experimental*\n')
self.num = int(num)
self.refname = refname
self.dbsnp = DBSNP(dbsnpname)
if not os.path.exists('%s.fai' % refname):
pysam.faidx(refname)
self.ref = pysam.Fastafile(refname)
