def test_CheckSubjectMatchesFilter():
restParser = RestParser()
if cmu_test_project_uuid:
project = cmu_test_project_uuid
else:
projects = restParser.run(BRAIN_VOL_FILES, '/projects')
project = projects[0]
subjects = restParser.run(BRAIN_VOL_FILES,
'/projects/{}/subjects'.format(project))
subject = subjects['uuid'][0]
derivatives = Query.GetDerivativesDataForSubject(BRAIN_VOL_FILES, project,
subject)
for skey in derivatives:
for vkey in derivatives[skey]['values']:
dt = vkey
val = derivatives[skey]['values'][vkey]['value']
if (dt and val):
break
# find an actual stat and build a matching filter to make sure our matcher passes it
filter = "derivatives.{} eq {}".format(dt, val)
assert Query.CheckSubjectMatchesFilter(BRAIN_VOL_FILES, project, subject,
filter)
instruments = Query.GetParticipantInstrumentData(BRAIN_VOL_FILES, project,
subject)
for (i, inst) in instruments.items():
if 'AGE_AT_SCAN' in inst:
age = inst['AGE_AT_SCAN']
older = str(float(age) + 1)
younger = str(float(age) - 1)
assert Query.CheckSubjectMatchesFilter(
BRAIN_VOL_FILES, project, subject,
"instruments.AGE_AT_SCAN eq {}".format(str(age)))
assert (Query.CheckSubjectMatchesFilter(
BRAIN_VOL_FILES, project, subject,
"instruments.AGE_AT_SCAN lt {}".format(younger)) == False)
assert (Query.CheckSubjectMatchesFilter(
BRAIN_VOL_FILES, project, subject,
"instruments.AGE_AT_SCAN gt {}".format(younger)) == True)
assert Query.CheckSubjectMatchesFilter(
BRAIN_VOL_FILES, project, subject,
"instruments.AGE_AT_SCAN lt {}".format(older))
assert (Query.CheckSubjectMatchesFilter(
BRAIN_VOL_FILES, project, subject,
"instruments.AGE_AT_SCAN gt {}".format(older)) == False)
eq__format = "instruments.{} eq '{}'".format('WISC_IV_VOCAB_SCALED', 'nan')
assert Query.CheckSubjectMatchesFilter(BRAIN_VOL_FILES, project, subject,
eq__format)
eq__format = "instruments.{} eq '{}'".format('WISC_IV_VOCAB_SCALED',
'not a match')
assert (Query.CheckSubjectMatchesFilter(BRAIN_VOL_FILES, project, subject,
eq__format) == False)
def subjectsList(self):
match = re.match(r"^/?projects/([^/]+)/subjects/?$", self.command)
project = match.group((1))
self.restLog(
"Returning all agents matching filter '{}' for project {}".format(
self.query['filter'], project), 2)
# result = Query.GetParticipantUUIDsForProject(self.nidm_files, project, self.query['filter'], None)
all_subjects = Navigate.getSubjects(self.nidm_files, project)
result = {}
result['uuid'] = []
result['subject id'] = []
for sub_uuid in all_subjects:
if Query.CheckSubjectMatchesFilter(self.nidm_files, project,
sub_uuid, self.query['filter']):
uuid_string = (str(sub_uuid)).split('/')[
-1] # srip off the http://whatever/whatever/
result['uuid'].append(uuid_string)
sid = Navigate.getSubjectIDfromUUID(self.nidm_files, sub_uuid)
result['subject id'].append(str(sid))
return self.format(result)