def test_Proj_thresh():
proj = fsl.ProjThresh()
# make sure command gets called
yield assert_equal, proj.cmd, 'proj_thresh'
# test raising error with mandatory args absent
yield assert_raises, ValueError, proj.run
# .inputs based parameters setting
proj.inputs.volumes = ['vol1', 'vol2', 'vol3']
proj.inputs.threshold = 3
yield assert_equal, proj.cmdline, 'proj_thresh vol1 vol2 vol3 3'
proj2 = fsl.ProjThresh(threshold=10, volumes=['vola', 'volb'])
yield assert_equal, proj2.cmdline, 'proj_thresh vola volb 10'
# .run based parameters setting
proj3 = fsl.ProjThresh()
results = proj3.run(volumes=['inp1', 'inp3', 'inp2'], threshold=2)
yield assert_equal, results.runtime.cmdline, 'proj_thresh inp1 inp3 inp2 2'
yield assert_not_equal, results.runtime.returncode, 0
yield assert_equal, isinstance(results.interface.inputs.volumes,
list), True
yield assert_equal, results.interface.inputs.threshold, 2
def test_Proj_thresh():
proj = fsl.ProjThresh()
# make sure command gets called
assert proj.cmd == "proj_thresh"
# test raising error with mandatory args absent
with pytest.raises(ValueError):
proj.run()
# .inputs based parameters setting
proj.inputs.volumes = ["vol1", "vol2", "vol3"]
proj.inputs.threshold = 3
assert proj.cmdline == "proj_thresh vol1 vol2 vol3 3"
proj2 = fsl.ProjThresh(threshold=10, volumes=["vola", "volb"])
assert proj2.cmdline == "proj_thresh vola volb 10"
# .run based parameters setting
proj3 = fsl.ProjThresh()
results = proj3.run(volumes=["inp1", "inp3", "inp2"], threshold=2)
assert results.runtime.cmdline == "proj_thresh inp1 inp3 inp2 2"
assert results.runtime.returncode != 0
assert isinstance(results.interface.inputs.volumes, list)
assert results.interface.inputs.threshold == 2
def test_Proj_thresh():
proj = fsl.ProjThresh()
# make sure command gets called
assert proj.cmd == 'proj_thresh'
# test raising error with mandatory args absent
with pytest.raises(ValueError):
proj.run()
# .inputs based parameters setting
proj.inputs.volumes = ['vol1', 'vol2', 'vol3']
proj.inputs.threshold = 3
assert proj.cmdline == 'proj_thresh vol1 vol2 vol3 3'
proj2 = fsl.ProjThresh(threshold=10, volumes=['vola', 'volb'])
assert proj2.cmdline == 'proj_thresh vola volb 10'
# .run based parameters setting
proj3 = fsl.ProjThresh()
results = proj3.run(volumes=['inp1', 'inp3', 'inp2'], threshold=2)
assert results.runtime.cmdline == 'proj_thresh inp1 inp3 inp2 2'
assert results.runtime.returncode != 0
assert isinstance(results.interface.inputs.volumes, list) == True
assert results.interface.inputs.threshold == 2
def test_projthresh():
input_map = dict(args = dict(argstr='%s',),
environ = dict(),
in_files = dict(argstr='%s',mandatory=True,),
output_type = dict(),
threshold = dict(mandatory=True,argstr='%d',),
)
instance = fsl.ProjThresh()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(instance.inputs.traits()[key], metakey), value