def _add_provenance(in_file, settings, air_msk, rot_msk):
from mriqc import __version__ as version
from niworkflows.nipype.utils.filemanip import hash_infile
import nibabel as nb
import numpy as np
air_msk_size = nb.load(air_msk).get_data().astype(
np.uint8).sum()
rot_msk_size = nb.load(rot_msk).get_data().astype(
np.uint8).sum()
out_prov = {
'md5sum': hash_infile(in_file),
'version': version,
'software': 'mriqc',
'warnings': {
'small_air_mask': bool(air_msk_size < 5e5),
'large_rot_frame': bool(rot_msk_size > 500),
}
}
if settings:
out_prov['settings'] = settings
return out_prov
def _add_provenance(in_file, settings, air_msk, rot_msk):
from mriqc import __version__ as version
from niworkflows.nipype.utils.filemanip import hash_infile
import nibabel as nb
import numpy as np
air_msk_size = nb.load(air_msk).get_data().astype(
np.uint8).sum()
rot_msk_size = nb.load(rot_msk).get_data().astype(
np.uint8).sum()
out_prov = {
'md5sum': hash_infile(in_file),
'version': version,
'software': 'mriqc',
'warnings': {
'small_air_mask': bool(air_msk_size < 5e5),
'large_rot_frame': bool(rot_msk_size > 500),
}
}
if settings:
out_prov['settings'] = settings
return out_prov
def main():
"""Entry point"""
from fmriprep.workflows.bold.util import init_bold_reference_wf
opts = get_parser().parse_args()
wf = init_bold_reference_wf(1,
name=hash_infile(opts.input_file),
gen_report=True)
wf.inputs.inputnode.bold_file = opts.input_file
wf.base_dir = os.getcwd()
wf.run()
def _add_provenance(in_file, settings):
from mriqc import __version__ as version
from niworkflows.nipype.utils.filemanip import hash_infile
out_prov = {
'md5sum': hash_infile(in_file),
'version': version,
'software': 'mriqc'
}
if settings:
out_prov['settings'] = settings
return out_prov
def _add_provenance(in_file, settings):
from mriqc import __version__ as version
from niworkflows.nipype.utils.filemanip import hash_infile
out_prov = {
'md5sum': hash_infile(in_file),
'version': version,
'software': 'mriqc'
}
if settings:
out_prov['settings'] = settings
return out_prov