def test_nix_to_odml_empty(self):
file_name = 'tmp'
nix_path = os.path.join(self.test_dir, file_name + '.nix')
odml_path = os.path.join(self.test_dir, file_name + '.xml')
odml.Property(parent=self.odml_doc.sections[0])
convert.nixwrite(self.odml_doc, nix_path, nix.FileMode.Overwrite)
nix_file_r = nix.File.open(nix_path, nix.FileMode.ReadOnly)
convert.odmlwrite(nix_file_r, odml_path)
odml_doc = odml.load(odml_path)
self.assertEqual(len(odml_doc.sections[0].props), 1)
odml_prop = odml_doc.sections[0].props[0]
self.assertGreater(len(getattr(odml_prop, "id")), 0)
self.assertEqual(getattr(odml_prop, "name"), getattr(odml_prop, "id"))
self.assertEqual(getattr(odml_prop, "values"), [])
self.assertEqual(getattr(odml_prop, "dtype"), None)
self.assertEqual(getattr(odml_prop, "definition"), None)
self.assertEqual(getattr(odml_prop, "unit"), None)
self.assertEqual(getattr(odml_prop, "uncertainty"), None)
self.assertEqual(getattr(odml_prop, "reference"), None)
self.assertEqual(getattr(odml_prop, "dependency"), None)
self.assertEqual(getattr(odml_prop, "dependency_value"), None)
self.assertEqual(getattr(odml_prop, "value_origin"), None)
nix_file_r.close()
def test_odml_to_nix_empty(self):
file_name = 'tmp'
nix_path = os.path.join(self.test_dir, file_name + '.nix')
odml.Property(parent=self.odml_doc.sections[0])
convert.nixwrite(self.odml_doc, nix_path, 'overwrite')
nix_file = nix.File.open(nix_path)
self.assertEqual(len(nix_file.sections[0].sections[0].props), 1)
nix_prop = nix_file.sections[0].sections[0].props[0]
self.assertGreater(len(getattr(nix_prop, "id")), 0)
self.assertEqual(getattr(nix_prop, "name"), getattr(nix_prop, "id"))
self.assertEqual(getattr(nix_prop, "values"), ())
self.assertEqual(getattr(nix_prop, "data_type"), np.str_)
self.assertEqual(getattr(nix_prop, "odml_type"), None)
self.assertEqual(getattr(nix_prop, "definition"), None)
self.assertEqual(getattr(nix_prop, "unit"), None)
self.assertEqual(getattr(nix_prop, "uncertainty"), None)
self.assertEqual(getattr(nix_prop, "reference"), None)
self.assertEqual(getattr(nix_prop, "dependency"), None)
self.assertEqual(getattr(nix_prop, "dependency_value"), None)
self.assertEqual(getattr(nix_prop, "value_origin"), None)
nix_file.close()
def test_odml_to_nix_tuple(self):
file_name_1 = 'tmp' + str(uuid.uuid4())
nix_path_1 = os.path.join(self.test_dir, file_name_1 + '.nix')
odml.Property(name='2-tuple property',
values=["(1; 2)", "(3; 4)"],
parent=self.odml_doc.sections[0],
dtype='2-tuple')
convert.nixwrite(self.odml_doc, nix_path_1, 'overwrite')
nix_file_1 = nix.File.open(nix_path_1)
nix_prop_1 = nix_file_1.sections[0].sections[0].props[0]
vals_1 = nix_prop_1.values
#assert None, such that backconversion works correctly
self.assertEqual(getattr(nix_prop_1, "odml_type"), None)
self.assertEqual(getattr(nix_prop_1, "data_type"), np.str_)
self.assertEqual(len(vals_1), 2)
self.assertEqual(vals_1, ("(1; 2)", "(3; 4)"))
nix_file_1.close()
file_name_2 = 'tmp' + str(uuid.uuid4())
nix_path_2 = os.path.join(self.test_dir, file_name_2 + '.nix')
odml.Property(name='3-tuple property',
values=["(1; 2; 3)", "(4; 5; 6)"],
parent=self.odml_doc.sections[0],
dtype='3-tuple')
convert.nixwrite(self.odml_doc, nix_path_2, 'overwrite')
nix_file_2 = nix.File.open(nix_path_2)
nix_prop_2 = nix_file_2.sections[0].sections[0].props[1]
vals_2 = nix_prop_2.values
#assert None, such that backconversion works correctly
self.assertEqual(getattr(nix_prop_2, "odml_type"), None)
self.assertEqual(getattr(nix_prop_2, "data_type"), np.str_)
self.assertEqual(len(vals_2), 2)
self.assertEqual(vals_2, ("(1; 2; 3)", "(4; 5; 6)"))
nix_file_2.close()
def test_nix_to_odml_none(self):
file_name = 'tmp'
nix_path = os.path.join(self.test_dir, file_name + '.nix')
odml_path = os.path.join(self.test_dir, file_name + '.xml')
odml.Section(name=None,
oid=None,
definition=None,
parent=self.odml_doc,
type="MustBeSet",
reference=None,
repository=None,
link=None,
include=None)
convert.nixwrite(self.odml_doc, nix_path, nix.FileMode.Overwrite)
nix_file_r = nix.File.open(nix_path, nix.FileMode.ReadOnly)
convert.odmlwrite(nix_file_r, odml_path)
odml_doc = odml.load(odml_path)
self.assertEqual(len(odml_doc.sections), 1)
odml_sec = odml_doc.sections[0]
self.assertGreater(len(getattr(odml_sec, "id")), 0)
self.assertEqual(getattr(odml_sec, "name"), getattr(odml_sec, "id"))
self.assertEqual(getattr(odml_sec, "type"), "MustBeSet")
self.assertEqual(getattr(odml_sec, "definition"), None)
self.assertEqual(getattr(odml_sec, "reference"), None)
self.assertEqual(getattr(odml_sec, "repository"), None)
self.assertEqual(getattr(odml_sec, "link"), None)
self.assertEqual(getattr(odml_sec, "include"), None)
nix_file_r.close()
def test_odml_to_nix_none(self):
file_name = 'tmp'
nix_path = os.path.join(self.test_dir, file_name + '.nix')
odml.Section(name=None,
oid=None,
definition=None,
parent=self.odml_doc,
type="MustBeSet",
reference=None,
repository=None,
link=None,
include=None)
convert.nixwrite(self.odml_doc, nix_path, 'overwrite')
nix_file = nix.File.open(nix_path)
self.assertEqual(len(nix_file.sections[0].sections), 1)
nix_sec = nix_file.sections[0].sections[0]
self.assertGreater(len(getattr(nix_sec, "id")), 0)
self.assertEqual(getattr(nix_sec, "name"), getattr(nix_sec, "id"))
self.assertEqual(getattr(nix_sec, "type"), "MustBeSet")
self.assertEqual(getattr(nix_sec, "definition"), None)
self.assertEqual(getattr(nix_sec, "reference"), None)
self.assertEqual(getattr(nix_sec, "repository"), None)
self.assertEqual(getattr(nix_sec, "link"), None)
#self.assertEqual(getattr(nix_sec, "include"), None)
nix_file.close()
def test_odml_to_nix_int(self):
file_name = 'tmp' + str(uuid.uuid4())
nix_path = os.path.join(self.test_dir, file_name + '.nix')
odml.Property(name='int property',
values=[1, 2, 3],
parent=self.odml_doc.sections[0],
dtype='int')
convert.nixwrite(self.odml_doc, nix_path, 'overwrite')
nix_file = nix.File.open(nix_path)
nix_prop = nix_file.sections[0].sections[0].props[0]
vals = nix_prop.values
self.assertEqual(getattr(nix_prop, "odml_type"), nix.OdmlType("int"))
self.assertEqual(getattr(nix_prop, "data_type"), np.int64)
self.assertEqual(len(vals), 3)
self.assertEqual(vals, (1, 2, 3))
nix_file.close()
def test_odml_to_nix_time(self):
file_name = 'tmp' + str(uuid.uuid4())
nix_path = os.path.join(self.test_dir, file_name + '.nix')
odml.Property(name='time property',
values=[datetime.time(11, 11, 11), '02:02:02'],
parent=self.odml_doc.sections[0],
dtype='time')
convert.nixwrite(self.odml_doc, nix_path, 'overwrite')
nix_file = nix.File.open(nix_path)
nix_prop = nix_file.sections[0].sections[0].props[0]
vals = nix_prop.values
self.assertEqual(getattr(nix_prop, "odml_type"), nix.OdmlType("time"))
self.assertEqual(getattr(nix_prop, "data_type"), np.str_)
self.assertEqual(len(vals), 2)
self.assertEqual(vals, ('11:11:11', '02:02:02'))
nix_file.close()
def test_odml_to_nix_boolean(self):
file_name = 'tmp' + str(uuid.uuid4())
nix_path = os.path.join(self.test_dir, file_name + '.nix')
odml.Property(name='boolean property',
values=[True, False, 1],
parent=self.odml_doc.sections[0],
dtype='boolean')
convert.nixwrite(self.odml_doc, nix_path, 'overwrite')
nix_file = nix.File.open(nix_path)
nix_prop = nix_file.sections[0].sections[0].props[0]
vals = nix_prop.values
self.assertEqual(getattr(nix_prop, "odml_type"),
nix.OdmlType("boolean"))
self.assertEqual(getattr(nix_prop, "data_type"), np.bool_)
self.assertEqual(len(vals), 3)
self.assertEqual(vals, (True, False, 1))
nix_file.close()
def test_double_conversion(self):
nf = os.path.join(self.test_dir, 'tmp.nix')
of = os.path.join(self.test_dir, 'tmp.odml')
convert.nixwrite(self.odml_doc, nf, 'overwrite')
nix_file = nix.File(nf)
convert.odmlwrite(nix_file, of)
odml_doc = odml.load(of)
for attr in document_attributes:
self.assertEqual(getattr(self.odml_doc, attr), getattr(odml_doc, attr))
for sec in self.odml_doc.sections:
sec2 = odml_doc.sections[sec.name]
for attr in section_attributes:
self.assertEqual(getattr(sec, attr), getattr(sec2, attr))
for prop in sec.properties:
prop2 = sec2.properties[prop.name]
for attr in property_attributes:
self.assertEqual(getattr(prop, attr), getattr(prop2, attr))
nix_file.close()