def syntaxFeaturesDiagram():
"This runs on flenser so it properly should have a 'gen' prefix I guess"
run('ghc -O2 --make FormatFeatures')
for sample in consts.samples:
for feature in consts.features:
for norm2 in ['over', 'ratio']:
v = (sample,feature,norm2)
run('./FormatFeatures feat-5-%s-%s-%s.txt' % v)
for (fro,to) in norte.pairwise(sorted(consts.agreeClusters.keys(), reverse=True)):
fname = ('%s-%s-feat-5-%s-%s-%s' % ((to,fro) + v),)
run('latex %s.txt' % fname)
run('dvips -Ppdf %s.dvi' % fname)
run('ps2pdf %s.ps' % fname)
run('mv *pdf ../')
def syntaxFeatures():
run('ghc -O2 --make RankFeatures')
clusters = sorted(consts.agreeClusters.keys(), reverse=True)
# 12. Dump a list of all features between each pair of site clusters.
for sample in consts.samples:
for feature in consts.features:
for norm2 in ['over', 'ratio']:
# 12.1 Make cluster files first
norte.combineFeatures(consts.agreeClusters, feature)
multirun(6,
*norte.icetasks(clusters, feature,
'icefeat.cpp', 'r', sample, norm2))
# 12.2 Then analyse it
tmps = ' '.join(["%s-%s-tmp.txt" % pair
for pair in norte.pairwise(clusters)])
run('./RankFeatures %s >feat-5-%s-%s-%s.txt'
% (tmps,sample,feature,norm2))