def setup(log='fwrap_setup.log', *args, **kwargs):
if log:
_old_stdout, _old_stderr = sys.stdout, sys.stderr
log = open(log, 'w')
sys.stdout = log
sys.stderr = log
try:
np_setup(*args, **kwargs)
finally:
if log:
log.flush()
log.close()
sys.stdout, sys.stderr = _old_stdout, _old_stderr
import os
# BEFORE importing distutils, remove MANIFEST. distutils doesn't properly
# update it when the contents of directories change.
if os.path.exists('MANIFEST'):
os.remove('MANIFEST')
from numpy.distutils.misc_util import Configuration
def configuration(parent_package='', top_path=None):
config = Configuration('calm', parent_package, top_path)
config.add_subpackage('test')
config.add_data_dir('test_data')
return config
if __name__ == '__main__':
from numpy.distutils.core import setup as np_setup
np_setup(**configuration(top_path='').todict())
extension_name = ".".join(["bgd", source_file])
extension_name = os.path.splitext(extension_name)[0]
print(extension_name, sources)
extensions.append(
Extension(extension_name,
sources,
language="c",
include_dirs=[np.get_include()],
extra_compile_args=['-fopenmp', '-O3'],
extra_link_args=['-fopenmp']))
extensions[-1].cython_directives = {'embedsignature': True}
build_cmds = {'install', 'build', 'build_ext'}
GOT_BUILD_CMD = len(set(sys.argv) & build_cmds) != 0
if USE_CYTHON and GOT_BUILD_CMD:
# Setting "bgd" as the root package
# This is to prevent cython from generating inappropriate variable names
# (because it is based on a relative path)
init_path = os.path.join(os.path.realpath(__file__), "../__init__.py")
if os.path.isfile(init_path):
os.remove(init_path)
print("__init__.py file removed")
# Generates the C files, but does not compile them
print('\t\tCYTHONINZING')
extensions = cythonize(extensions,
language="c",
compiler_directives={'embedsignature': True})
if GOT_BUILD_CMD:
np_setup(**setup_args)
'-msse',
'-msse2',
'-mfma',
'-mfpmath=sse',
]
LIBRARIES = ["m"] if os.name == "posix" else list()
INCLUDE_DIRS = [np.get_include()]
CONFIG = Configuration(SRC_FOLDER, "", "")
for sub_package in SUB_PACKAGES:
CONFIG.add_subpackage(sub_package)
for sources, extension_name in SRC_FILES:
sources = [os.path.join(SRC_FOLDER, source) for source in sources]
#extension_name = os.path.splitext(extension_name)[0]
print(extension_name, sources)
CONFIG.add_extension(extension_name,
sources=sources,
include_dirs=INCLUDE_DIRS + [os.curdir],
libraries=LIBRARIES,
extra_compile_args=COMPILE_ARGS,
extra_link_args=['-fopenmp'])
np_setup(**CONFIG.todict())
if DELETE_GENERATED_C_FILES:
for source_file in SRC_FILES:
filepath = os.path.join(SRC_FOLDER, source_file[0][0])
if os.path.isfile(filepath) and os.path.splitext(filepath)[1] == '.c':
os.remove(filepath)
(["math.c"], "math"), (["maxent.py"], "maxent"), (["stats.c"], "stats"),
(["ann/layers.py"], "ann.layers"), (["ann/model.py"], "ann.model"),
(["ann/subnetworks.py"], "ann.subnetworks"),
(["estimation/clustering.c",
"estimation/cmeans_.c"], "estimation.clustering"),
(["estimation/cpd.c", "estimation/kernel_.c",
"estimation/queue_.c"], "estimation.cpd"),
(["misc/check_data.py"], "check_data"),
(["misc/exceptions.py"], "exceptions"), (["misc/topology.py"], "topology"),
(["misc/utils.py"], "utils")
]
extra_compile_args = list()
libraries = ["m"] if os.name == "posix" else list()
include_dirs = [np.get_include()]
config = Configuration(source_folder, "", "")
for sub_package in sub_packages:
config.add_subpackage(sub_package)
for sources, extension_name in source_files:
sources = [os.path.join(source_folder, source) for source in sources]
print(extension_name, sources)
config.add_extension(extension_name,
sources=sources,
include_dirs=include_dirs + [os.curdir],
libraries=libraries,
extra_compile_args=extra_compile_args)
np_setup(**config.todict())
import os
# BEFORE importing distutils, remove MANIFEST. distutils doesn't properly
# update it when the contents of directories change.
if os.path.exists('MANIFEST'):
os.remove('MANIFEST')
from numpy.distutils.misc_util import Configuration
def configuration(parent_package='', top_path=None):
config = Configuration('palm', parent_package, top_path)
config.add_subpackage('base')
config.add_subpackage('test')
config.add_data_dir('data')
config.add_data_dir('test/test_data')
config.add_data_dir('scripts')
return config
if __name__ == '__main__':
from numpy.distutils.core import setup as np_setup
np_setup(**configuration(top_path='').todict())