def get_metadata_schema(self):
metadata_schema = super().get_metadata_schema()
# Ecephys metadata schema
metadata_schema['properties']['Ecephys'] = get_base_schema()
metadata_schema['properties']['Ecephys']['properties'] = dict(
Device=get_schema_from_hdmf_class(Device),
ElectricalSeries=get_schema_from_hdmf_class(ElectricalSeries),
)
return metadata_schema
def get_metadata_schema(self):
metadata_schema = super().get_metadata_schema()
# Ophys metadata schema
metadata_schema['properties']['Ophys'] = get_base_schema()
metadata_schema['properties']['Ophys']['required'] = ['Device', 'FRET']
metadata_schema['properties']['Ophys']['properties'] = dict(
Device=get_schema_from_hdmf_class(Device),
FRET=get_schema_from_hdmf_class(FRET)
)
return metadata_schema
def get_metadata_schema(self):
metadata_schema = super().get_metadata_schema()
# Ogen metadata schema
metadata_schema['properties']['Ogen'] = get_base_schema()
metadata_schema['properties']['Ogen']['properties'] = dict(
Device=get_schema_from_hdmf_class(Device),
OptogeneticStimulusSite=get_schema_from_hdmf_class(
OptogeneticStimulusSite),
OptogeneticSeries=get_schema_from_hdmf_class(OptogeneticSeries))
return metadata_schema
def get_metadata_schema(self):
metadata_schema = get_base_schema()
# ideally most of this be automatically determined from pynwb docvals
metadata_schema['properties'][
'TimeSeries'] = get_schema_from_hdmf_class(TimeSeries)
metadata_schema['properties'][
'DecompositionSeries'] = get_schema_from_hdmf_class(
DecompositionSeries)
required_fields = ['TimeSeries', 'DecompositionSeries']
for field in required_fields:
metadata_schema['required'].append(field)
return metadata_schema
def get_metadata_schema(self):
"""Compile metadata schema for the ImageExtractor."""
metadata_schema = super().get_metadata_schema()
metadata_schema['required'] = ['Ophys']
# Initiate Ophys metadata
metadata_schema['properties']['Ophys'] = get_base_schema()
metadata_schema['properties']['Ophys']['properties'] = dict(
Device=get_schema_from_hdmf_class(Device),
ImagingPlane=get_schema_from_hdmf_class(ImagingPlane),
TwoPhotonSeries=get_schema_from_hdmf_class(TwoPhotonSeries))
metadata_schema['properties']['Ophys']['required'] = \
['Device', 'ImagingPlane', 'TwoPhotonSeries']
fill_defaults(metadata_schema, self.get_metadata())
return metadata_schema
def get_metadata_schema(self):
metadata_schema = super().get_metadata_schema()
metadata_schema['properties']['Ophys'] = get_base_schema(tag='Ophys')
metadata_schema['properties']['Ophys']['properties'][
'Device'] = get_schema_from_hdmf_class(pynwb.device.Device)
metadata_schema['properties']['Ophys']['properties'][
'ImagingPlane'] = get_schema_from_hdmf_class(
pynwb.ophys.ImagingPlane)
metadata_schema['properties']['Ophys']['properties'][
'TwoPhotonSeries_green'] = get_schema_from_hdmf_class(
pynwb.ophys.TwoPhotonSeries)
metadata_schema['properties']['Ophys']['properties'][
'Fluorescence'] = get_schema_from_hdmf_class(
pynwb.ophys.Fluorescence)
return metadata_schema
def get_metadata_schema(self):
metadata_schema = super().get_metadata_schema()
metadata_schema['properties']['Ecephys'] = get_base_schema(
tag='Ecephys')
metadata_schema['properties']['Ecephys']['properties'][
'Device'] = get_schema_from_hdmf_class(pynwb.device.Device)
metadata_schema['properties']['Ecephys']['properties'][
'ElectrodeGroup'] = get_schema_from_hdmf_class(
pynwb.ecephys.ElectrodeGroup)
metadata_schema['properties']['Ecephys']['properties'][
'ElectricalSeries_raw'] = get_schema_from_hdmf_class(
pynwb.ecephys.ElectricalSeries)
metadata_schema['properties']['Ecephys']['properties'][
'ElectricalSeries_processed'] = get_schema_from_hdmf_class(
pynwb.ecephys.ElectricalSeries)
return metadata_schema
def get_metadata_schema(self):
"""Compile metadata schema for the RecordingExtractor."""
metadata_schema = super().get_metadata_schema()
# Initiate Ecephys metadata
metadata_schema['properties']['Ecephys'] = get_base_schema(
tag='Ecephys')
metadata_schema['properties']['Ecephys']['properties'] = dict(
Device=get_schema_from_hdmf_class(Device),
ElectrodeGroup=get_schema_from_hdmf_class(ElectrodeGroup),
ElectricalSeries=get_schema_from_hdmf_class(ElectricalSeries))
metadata_schema['properties']['Ecephys']['required'] = [
'Device', 'ElectrodeGroup', 'ElectricalSeries'
]
fill_defaults(metadata_schema, self.get_metadata())
return metadata_schema
def get_metadata_schema(self):
metadata_schema = NWBConverter.get_metadata_schema()
metadata_schema['required'].append('behavior', 'stimulus')
metadata_schema['properties']['behavior'] = get_base_schema()
metadata_schema['properties']['stimulus'] = get_base_schema()
metadata_schema['properties']['behavior']['properties'] = dict(
BehavioralTimeSeries=get_schema_from_hdmf_class(
BehavioralTimeSeries), )
def get_metadata_schema(self):
metadata_schema = get_base_schema(
required=['SpikeEventSeries'],
properties=dict(
SpikeEventSeries=get_schema_from_hdmf_class(SpikeEventSeries)))
# fill_defaults(metadata_schema, self.get_metadata())
return metadata_schema
