def test_parallel3d(self):
print('PARALLEL 3D')
data = ctdata.sets['parallel3d']
data.load()
print ' Data detector width:', data.detector_width_mm
print ' Data projections shape:', data.projections.shape
geom = self.geom(data, 3*(100,), 3*(100,))
projector = self.projector(geom)
# Adjoint <Ax,y>=<x,Ad y> with x[:]=1 and y[:]=1
rn_vol0 = Rn(geom.vol_size).element(1)
rn_proj0 = Rn(geom.proj_size).element(1)
rn_proj = projector.forward(rn_vol0)
rn_vol = projector.backward(rn_proj0)
l = rn_proj.inner(rn_proj0)
r = rn_vol0.inner(rn_vol)
print(' Adjoint with x[:]=1 and y[:]=1:')
print(' <Ax,y> = <x,Ad y> : {0} = {1}'.format(l, r))
print(' |<Ax,y> - <x,Ad y>| = {0}'.format(np.abs(l - r)))
print(' <Ax,y> / <x,Ad y> -1 = {0}'.format(l / r - 1))
# Back-project phantom data
rn_proj = Rn(geom.proj_size).element(data.projections.ravel())
rn_bp = projector.backward(rn_proj)
projector.clear_astra_memory()
def test_parallel3d(self):
print('PARALLEL 3D')
data = ctdata.sets['parallel3d']
data.load()
print ' Data detector width:', data.detector_width_mm
print ' Data projections shape:', data.projections.shape
geom = self.geom(data, 3 * (100, ), 3 * (100, ))
projector = self.projector(geom)
# Adjoint <Ax,y>=<x,Ad y> with x[:]=1 and y[:]=1
rn_vol0 = Rn(geom.vol_size).element(1)
rn_proj0 = Rn(geom.proj_size).element(1)
rn_proj = projector.forward(rn_vol0)
rn_vol = projector.backward(rn_proj0)
l = rn_proj.inner(rn_proj0)
r = rn_vol0.inner(rn_vol)
print(' Adjoint with x[:]=1 and y[:]=1:')
print(' <Ax,y> = <x,Ad y> : {0} = {1}'.format(l, r))
print(' |<Ax,y> - <x,Ad y>| = {0}'.format(np.abs(l - r)))
print(' <Ax,y> / <x,Ad y> -1 = {0}'.format(l / r - 1))
# Back-project phantom data
rn_proj = Rn(geom.proj_size).element(data.projections.ravel())
rn_bp = projector.backward(rn_proj)
projector.clear_astra_memory()
def test_fanflat(self):
print('FANFLAT')
data = ctdata.sets['fanflat']
data.load()
print 'Data detector width:', data.detector_width_mm
print 'Data projections shape:', data.projections.shape
wr = data.roi_cubic_width_mm
print ' ROI width:', wr
# geom = self.geom(data, 2*(100,), 2*(np.floor(wr),))
geom = self.geom(data, 2*(100,), 2*(100,))
print ' Detector pixel width:', geom.det_col_spacing, geom.det_row_spacing
print ' Vol width:', geom.vol_width_mm
print ' Voxel width:', geom.voxel_width
projector = self.projector(geom)
# Adjoint <Ax,y>=<x,Ad y> with x[:]=1 and y[:]=1
rn_vol0 = Rn(geom.vol_size).element(1)
rn_proj0 = Rn(geom.proj_size).element(1)
rn_proj = projector.forward(rn_vol0)
rn_vol = projector.backward(rn_proj0)
l = rn_proj.inner(rn_proj0)
r = rn_vol0.inner(rn_vol)
print(' Adjoint with x[:]=1 and y[:]=1:')
print(' <Ax,y> = <x,Ad y> : {0} = {1}'.format(l, r))
print(' |<Ax,y> - <x,Ad y>| = {0}'.format(np.abs(l - r)))
print(' <Ax,y> / <x,Ad y> -1 = {0}'.format(l / r - 1))
# Back-project phantom data
rn_proj = Rn(geom.proj_size).element(data.projections.ravel())
rn_bp = projector.backward(rn_proj)
# FBP
rn_fbp = projector.fbp(rn_proj)
rec = np.reshape(rn_fbp.data, geom.vol_shape)
# plt.imshow(rec, cmap=plt.cm.Greys)
# plt.show()
projector.clear_astra_memory()
def test_fanflat(self):
print('FANFLAT')
data = ctdata.sets['fanflat']
data.load()
print 'Data detector width:', data.detector_width_mm
print 'Data projections shape:', data.projections.shape
wr = data.roi_cubic_width_mm
print ' ROI width:', wr
# geom = self.geom(data, 2*(100,), 2*(np.floor(wr),))
geom = self.geom(data, 2 * (100, ), 2 * (100, ))
print ' Detector pixel width:', geom.det_col_spacing, geom.det_row_spacing
print ' Vol width:', geom.vol_width_mm
print ' Voxel width:', geom.voxel_width
projector = self.projector(geom)
# Adjoint <Ax,y>=<x,Ad y> with x[:]=1 and y[:]=1
rn_vol0 = Rn(geom.vol_size).element(1)
rn_proj0 = Rn(geom.proj_size).element(1)
rn_proj = projector.forward(rn_vol0)
rn_vol = projector.backward(rn_proj0)
l = rn_proj.inner(rn_proj0)
r = rn_vol0.inner(rn_vol)
print(' Adjoint with x[:]=1 and y[:]=1:')
print(' <Ax,y> = <x,Ad y> : {0} = {1}'.format(l, r))
print(' |<Ax,y> - <x,Ad y>| = {0}'.format(np.abs(l - r)))
print(' <Ax,y> / <x,Ad y> -1 = {0}'.format(l / r - 1))
# Back-project phantom data
rn_proj = Rn(geom.proj_size).element(data.projections.ravel())
rn_bp = projector.backward(rn_proj)
# FBP
rn_fbp = projector.fbp(rn_proj)
rec = np.reshape(rn_fbp.data, geom.vol_shape)
# plt.imshow(rec, cmap=plt.cm.Greys)
# plt.show()
projector.clear_astra_memory()
def test_parallel(self):
print('PARALLEL')
data = ctdata.sets['parallel']
data.load()
print ' Data detector width:', data.detector_width_mm
print ' Data projections shape:', data.projections.shape
geom = self.geom(data, 2*(100,), 2*(100,))
print ' Detector pixel width:', geom.det_col_spacing, geom.det_row_spacing
projector = self.projector(geom)
# Adjoint <Ax,y>=<x,Ad y> with x[:]=1 and y[:]=1
rn_vol0 = Rn(geom.vol_size).element(1)
rn_proj0 = Rn(geom.proj_size).element(1)
rn_proj = projector.forward(rn_vol0)
rn_vol = projector.backward(rn_proj0)
l = rn_proj.inner(rn_proj0)
r = rn_vol0.inner(rn_vol)
print(' Adjoint with x[:]=1 and y[:]=1:')
print(' <Ax,y> = <x,Ad y> : {0} = {1}'.format(l, r))
print(' |<Ax,y> - <x,Ad y>| = {0}'.format(np.abs(l - r)))
print(' <Ax,y> / <x,Ad y> -1 = {0}'.format(l / r -1))
# Back-project phantom data
rn_proj = Rn(geom.proj_size).element(data.projections.ravel())
rn_bp = projector.backward(rn_proj)
# FBP
rn_fbp = projector.fbp(rn_proj)
rec = np.reshape(rn_fbp.data, geom.vol_shape)
import scipy.io as sio
sio.savemat(self.matfile, {'parallel_fbp': rec})
# plt.imshow(rec, cmap=plt.cm.Greys)
# plt.show()
projector.clear_astra_memory()
def test_parallel(self):
print('PARALLEL')
data = ctdata.sets['parallel']
data.load()
print ' Data detector width:', data.detector_width_mm
print ' Data projections shape:', data.projections.shape
geom = self.geom(data, 2 * (100, ), 2 * (100, ))
print ' Detector pixel width:', geom.det_col_spacing, geom.det_row_spacing
projector = self.projector(geom)
# Adjoint <Ax,y>=<x,Ad y> with x[:]=1 and y[:]=1
rn_vol0 = Rn(geom.vol_size).element(1)
rn_proj0 = Rn(geom.proj_size).element(1)
rn_proj = projector.forward(rn_vol0)
rn_vol = projector.backward(rn_proj0)
l = rn_proj.inner(rn_proj0)
r = rn_vol0.inner(rn_vol)
print(' Adjoint with x[:]=1 and y[:]=1:')
print(' <Ax,y> = <x,Ad y> : {0} = {1}'.format(l, r))
print(' |<Ax,y> - <x,Ad y>| = {0}'.format(np.abs(l - r)))
print(' <Ax,y> / <x,Ad y> -1 = {0}'.format(l / r - 1))
# Back-project phantom data
rn_proj = Rn(geom.proj_size).element(data.projections.ravel())
rn_bp = projector.backward(rn_proj)
# FBP
rn_fbp = projector.fbp(rn_proj)
rec = np.reshape(rn_fbp.data, geom.vol_shape)
import scipy.io as sio
sio.savemat(self.matfile, {'parallel_fbp': rec})
# plt.imshow(rec, cmap=plt.cm.Greys)
# plt.show()
projector.clear_astra_memory()
