def test_add_description(self):
tt1 = DEFINE.TranslatedText(_content="Age at Screening Date (Screening Date - Birth date)", lang="en")
tt2 = DEFINE.TranslatedText(_content="For the complete algorithm see the referenced external document.", lang="fr")
self.methoddef.Description = DEFINE.Description()
self.methoddef.Description.TranslatedText = [tt1, tt2]
self.assertEqual(len(self.methoddef.Description.TranslatedText), 2)
self.assertEqual(self.methoddef.Description.TranslatedText[1]._content,
'For the complete algorithm see the referenced external document.')
def test_to_xml_description(self):
tt1 = DEFINE.TranslatedText(_content="this is the first test description", lang="en")
tt2 = DEFINE.TranslatedText(_content="this is the second test description", lang="en")
desc = DEFINE.Description()
desc.TranslatedText = [tt1, tt2]
desc_xml = desc.to_xml()
tts = desc_xml.findall("TranslatedText")
self.assertEqual(tts[0].text, "this is the first test description")
def test_to_dict_description(self):
tt1 = DEFINE.TranslatedText(_content="this is the first test description", lang="en")
tt2 = DEFINE.TranslatedText(_content="this is the second test description", lang="en")
desc = DEFINE.Description()
desc.TranslatedText = [tt1, tt2]
desc_dict = desc.to_dict()
print(desc_dict)
self.assertDictEqual(desc_dict["TranslatedText"][1],
{'_content': 'this is the second test description', 'lang': 'en'})
def test_add_description(self):
tt1 = DEFINE.TranslatedText(
_content="this is the first test description", lang="en")
tt2 = DEFINE.TranslatedText(
_content="this is the second test description", lang="en")
self.igd.Description = DEFINE.Description()
self.igd.Description.TranslatedText = [tt1, tt2]
self.assertEqual(len(self.igd.Description.TranslatedText), 2)
self.assertEqual(self.igd.Description.TranslatedText[1]._content,
'this is the second test description')
def test_add_value_list_ref(self):
vlr = DEFINE.ValueListRef(ValueListOID="VL.DA.DAORRES")
attrs = {"OID": "IT.DA.DAORRES", "Name": "DAORRES", "DataType": "text", "Length": "2", "SASFieldName": "DAORRES"}
itd = DEFINE.ItemDef(**attrs)
tt1 = DEFINE.TranslatedText(_content="Assessment Result in Original Units", lang="en")
desc = DEFINE.Description()
desc.TranslatedText.append(tt1)
itd.Description = desc
itd.ValueListRef = vlr
self.assertEqual(itd.ValueListRef.ValueListOID, "VL.DA.DAORRES")
self.assertEqual(itd.OID, "IT.DA.DAORRES")
def test_to_dict(self):
attrs = self.set_attributes()
method = DEFINE.MethodDef(**attrs)
desc = DEFINE.Description()
tt1 = DEFINE.TranslatedText(_content="Age at Screening Date (Screening Date - Birth date)", lang="en")
desc.TranslatedText = [tt1]
method.Description = desc
fex = DEFINE.FormalExpression(Context="Python 3.7", _content="print('hello world')")
method.FormalExpression = [fex]
method_dict = method.to_dict()
self.assertEqual(method_dict["OID"], "ODM.MT.AGE")
self.assertDictEqual(method_dict, self.expected_dict())
def test_itemgroupdef_iterator(self):
""" test the ability to reference a specific or slice of ItemRefs """
attrs = self.set_itemgroupdef_attributes()
igd = DEFINE.ItemGroupDef(**attrs)
tt = DEFINE.TranslatedText(_content="Vital Signs", lang="en")
igd.Description = DEFINE.Description()
igd.Description.TranslatedText = [tt]
item_refs = self.set_itemrefs()
igd.ItemRef = item_refs
parser = ODM_PARSER.ODMParser(self.test_file, self.nsr)
parser.parse()
parser.MetaDataVersion()
irs = [ir.ItemOID for ir in igd]
self.assertEqual(len(irs), 10)
def test_itemgroupdef_slice(self):
""" test the ability to reference a specific or slice of ItemRefs """
attrs = self.set_itemgroupdef_attributes()
igd = DEFINE.ItemGroupDef(**attrs)
tt = DEFINE.TranslatedText(_content="Vital Signs", lang="en")
igd.Description = DEFINE.Description()
igd.Description.TranslatedText = [tt]
item_refs = self.set_itemrefs()
igd.ItemRef = item_refs
parser = ODM_PARSER.ODMParser(self.test_file, self.nsr)
parser.parse()
parser.MetaDataVersion()
self.assertEqual(len(igd), 10)
self.assertEqual(igd.ItemRef[0].ItemOID, "IT.STUDYID")
slice_itr = igd.ItemRef[1:5]
self.assertEqual(slice_itr[1].ItemOID, "IT.TA.ARMCD")
def test_itemgroupdef_round_trip(self):
""" system test to create and serialize an ItemGroupDef object """
attrs = self.set_itemgroupdef_attributes()
igd = DEFINE.ItemGroupDef(**attrs)
tt = DEFINE.TranslatedText(_content="Vital Signs", lang="en")
igd.Description = DEFINE.Description()
igd.Description.TranslatedText = [tt]
item_refs = self.set_itemrefs()
igd.ItemRef = item_refs
parser = ODM_PARSER.ODMParser(self.test_file, self.nsr)
parser.parse()
mdv = parser.MetaDataVersion()
igd_list = parser.ItemGroupDef(parent=mdv[0])
igd_dict = igd_list[0]
self.assertEqual(igd_dict["OID"], "IG.TA")
ir_list = parser.ItemRef(parent=igd_dict["elem"])
# tests the __len__ in ItemGroupDef as well as the add_item_ref
self.assertEqual(len(ir_list), len(igd))
def test_to_xml(self):
attrs = self.set_itemgroupdef_attributes()
igd = DEFINE.ItemGroupDef(**attrs)
tt = DEFINE.TranslatedText(
_content="this is the first test description", lang="en")
desc = DEFINE.Description()
desc.TranslatedText = [tt]
igd.Description = desc
ir1 = DEFINE.ItemRef(ItemOID="IT.STUDYID",
Mandatory="Yes",
OrderNumber=1)
ir2 = DEFINE.ItemRef(ItemOID="IT.VS.VSTEST",
Mandatory="No",
OrderNumber=2)
igd.ItemRef = [ir1, ir2]
igd_xml = igd.to_xml()
self.assertEqual(igd_xml.attrib["OID"], "IG.VS")
self.assertListEqual(["Description", "ItemRef", "ItemRef"],
[e.tag for e in igd_xml.getchildren()])
def test_to_json(self):
attrs = self.set_itemgroupdef_attributes()
igd = DEFINE.ItemGroupDef(**attrs)
tt = DEFINE.TranslatedText(
_content="this is the first test description", lang="en")
igd.Description = DEFINE.Description()
igd.Description.TranslatedText = [tt]
ir1 = DEFINE.ItemRef(ItemOID="IT.STUDYID",
Mandatory="Yes",
OrderNumber=1)
ir2 = DEFINE.ItemRef(ItemOID="IT.VS.VSTEST",
Mandatory="No",
OrderNumber=2)
igd.ItemRef = [ir1, ir2]
igd_json = igd.to_json()
igd_dict = json.loads(igd_json)
print(igd_dict)
self.assertEqual(igd_dict["OID"], "IG.VS")
self.assertEqual(igd_dict["ItemRef"][1]["ItemOID"], "IT.VS.VSTEST")