class RangeCheck(OE.ODMElement):
Comparator = T.ValueSetString(required=False)
SoftHard = T.ValueSetString(required=True)
CheckValue = T.ODMListObject(element_class=CheckValue)
FormalExpression = T.ODMListObject(element_class=FormalExpression)
MeasurementUnitRef = T.ODMObject(element_class=MeasurementUnitRef)
ErrorMessage = T.ODMObject(element_class=ErrorMessage)
class Address(OE.ODMElement):
StreetName = T.ODMListObject(element_class=StreetName)
City = T.ODMObject(element_class=City)
StateProv = T.ODMObject(element_class=StateProv)
Country = T.ODMObject(element_class=Country)
PostalCode = T.ODMObject(element_class=PostalCode)
OtherText = T.ODMObject(element_class=OtherText)
class ItemGroupDef(ODM.ItemGroupDef):
OID = ODM.ItemGroupDef.OID
Name = ODM.ItemGroupDef.Name
Repeating = ODM.ItemGroupDef.Repeating
IsReferenceData = ODM.ItemGroupDef.IsReferenceData
SASDatasetName = ODM.ItemGroupDef.SASDatasetName
Domain = ODM.ItemGroupDef.Domain
Purpose = ODM.ItemGroupDef.Purpose
Structure = T.String(required=True, namespace="def")
ArchiveLocationID = T.String(namespace="def")
CommentOID = T.OIDRef(namespace="def")
IsNonStandard = T.ValueSetString(namespace="def")
StandardOID = T.OIDRef(namespace="def")
HasNoData = T.ValueSetString(namespace="def")
Description = ODM.ItemGroupDef.Description
ItemRef = ODM.ItemGroupDef.ItemRef
Alias = ODM.ItemGroupDef.Alias
Class = T.ODMObject(element_class=Class, namespace="def")
leaf = T.ODMObject(required=True, element_class=leaf, namespace="def")
def __len__(self):
return len(self.ItemRef)
def __getitem__(self, position):
return self.ItemRef[position]
def __iter__(self):
return iter(self.ItemRef)
class StudyEventData(OE.ODMElement):
StudyEventOID = T.OIDRef(required=True)
StudyEventRepeatKey = T.String(required=False)
TransactionType = T.ValueSetString(required=False)
AuditRecord = T.ODMObject(required=False, element_class=AuditRecord)
Signature = T.ODMObject(required=False, element_class=Signature)
Annotation = T.ODMListObject(required=False, element_class=Annotation)
FormData = T.ODMListObject(required=False, element_class=FormData)
class WorkflowDef(OE.ODMElement):
OID = T.OID(required=True)
Name = T.Name(required=True)
Description = T.ODMObject(element_class=Description)
WorkflowStart = T.ODMObject(element_class=WorkflowStart, required=True)
Transition = T.ODMListObject(element_class=Transition)
Branching = T.ODMListObject(element_class=Branching)
WorkflowEnd = T.ODMListObject(element_class=WorkflowEnd, required=True)
class ExceptionEvent(OE.ODMElement):
OID = T.OID(required=True)
Name = T.Name(required=True)
ConditionOID = T.OIDRef(required=True)
Description = T.ODMObject(element_class=Description)
WorkflowRef = T.ODMObject(element_class=WorkflowRef)
StudyEventGroupRef = T.ODMListObject(element_class=StudyEventGroupRef)
StudyEventRef = T.ODMListObject(element_class=StudyEventRef)
class AuditRecord(OE.ODMElement):
EditPoint = T.ValueSetString(required=False)
UsedImputationMethod = T.ValueSetString(required=False)
ID = T.ID(required=False)
UserRef = T.ODMObject(required=True, element_class=UserRef)
LocationRef = T.ODMObject(required=True, element_class=LocationRef)
DateTimeStamp = T.ODMObject(required=True, element_class=DateTimeStamp)
ReasonForChange = T.ODMObject(required=False, element_class=ReasonForChange)
SourceID = T.ODMObject(required=False, element_class=SourceID)
class SubjectData(OE.ODMElement):
SubjectKey = T.String(required=True)
TransactionType = T.ValueSetString(required=False)
AuditRecord = T.ODMObject(required=False, element_class=AuditRecord)
Signature = T.ODMObject(required=False, element_class=Signature)
InvestigatorRef = T.ODMObject(required=False, element_class=InvestigatorRef)
SiteRef = T.ODMObject(required=False, element_class=SiteRef)
Annotation = T.ODMListObject(required=False, element_class=Annotation)
StudyEventData = T.ODMListObject(required=False, element_class=StudyEventData)
class ItemData(OE.ODMElement):
ItemOID = T.OIDRef(required=True)
TransactionType = T.ValueSetString(required=False)
Value = T.String(required=False)
IsNull = T.ValueSetString(required=False)
AuditRecord = T.ODMObject(required=False, element_class=AuditRecord)
Signature = T.ODMObject(required=False, element_class=Signature)
MeasurementUnitRef = T.ODMObject(required=False, element_class=MeasurementUnitRef)
Annotation = T.ODMListObject(required=False, element_class=Annotation)
class MethodDef(OE.ODMElement):
""" represents ODM v2.0 MethodDef and can serialize as JSON or XML """
OID = T.OID(required=True)
Name = T.Name(required=True)
Type = T.ValueSetString(required=True)
Description = T.ODMObject(required=True, element_class=Description)
MethodSignature = T.ODMObject(element_class=MethodSignature)
FormalExpression = T.ODMListObject(element_class=FormalExpression)
Alias = T.ODMListObject(element_class=Alias)
class FormData(OE.ODMElement):
FormOID = T.OIDRef(required=True)
FormRepeatKey = T.String(required=False)
TransactionType = T.ValueSetString(required=False)
AuditRecord = T.ODMObject(required=False, element_class=AuditRecord)
Signature = T.ODMObject(required=False, element_class=Signature)
ArchiveLayout = T.ODMObject(required=False, element_class=ArchiveLayout)
Annotation = T.ODMListObject(required=False, element_class=Annotation)
ItemGroupData = T.ODMListObject(required=False, element_class=ItemGroupData)
class CodeList(OE.ODMElement):
OID = T.OID(required=True)
Name = T.Name(required=True)
DataType = T.ValueSetString(required=True)
SASFormatName = T.SASFormat()
Description = T.ODMObject(element_class=Description)
CodeListItem = T.ODMListObject(element_class=CodeListItem)
EnumeratedItem = T.ODMListObject(element_class=EnumeratedItem)
ExternalCodeList = T.ODMObject(element_class=ExternalCodeList)
Alias = T.ODMListObject(element_class=Alias)
class EnumeratedItem(OE.ODMElement):
CodedValue = T.String(required=True)
ExtCodeID = T.String(required=True, namespace="nciodm")
CDISCSynonym = T.ODMListObject(element_class=CDISCSynonym,
namespace="nciodm")
CDISCDefinition = T.ODMObject(required=True,
element_class=CDISCDefinition,
namespace="nciodm")
PreferredTerm = T.ODMObject(required=True,
element_class=PreferredTerm,
namespace="nciodm")
class CodeList(OE.ODMElement):
""" represents ODM v1.3.2 CodeList element that can serialize as JSON or XML """
OID = T.OID(required=True)
Name = T.Name(required=True)
DataType = T.ValueSetString(required=True)
SASFormatName = T.SASFormat()
Description = T.ODMObject(element_class=Description)
CodeListItem = T.ODMListObject(element_class=CodeListItem)
EnumeratedItem = T.ODMListObject(element_class=EnumeratedItem)
ExternalCodeList = T.ODMObject(element_class=ExternalCodeList)
Alias = T.ODMListObject(element_class=Alias)
class MetaDataVersion(OE.ODMElement):
OID = T.OID(required=True)
Name = T.Name(required=True)
Description = T.String(required=False)
Include = T.ODMObject(element_class=Include)
Protocol = T.ODMObject(element_class=Protocol)
StudyEventDef = T.ODMListObject(element_class=StudyEventDef)
FormDef = T.ODMListObject(element_class=FormDef)
ItemGroupDef = T.ODMListObject(element_class=ItemGroupDef)
ItemDef = T.ODMListObject(element_class=ItemDef)
CodeList = T.ODMListObject(element_class=CodeList)
Presentation = T.ODMListObject(element_class=Presentation)
ConditionDef = T.ODMListObject(element_class=ConditionDef)
MethodDef = T.ODMListObject(element_class=MethodDef)
class ItemDef(ODM.ItemDef):
OID = ODM.ItemDef.OID
Name = ODM.ItemDef.Name
DataType = ODM.ItemDef.DataType
Length = ODM.ItemDef.Length
SignificantDigits = ODM.ItemDef.SignificantDigits
SASFieldName = ODM.ItemDef.SASFieldName
DisplayFormat = T.String(namespace="def")
CommentOID = T.OIDRef(namespace="def")
Description = ODM.ItemDef.Description
CodeListRef = ODM.ItemDef.CodeListRef
Origin = T.ODMObject(element_class=Origin, namespace="def")
ValueListRef = T.ODMObject(element_class=ValueListRef, namespace="def")
Alias = T.ODMListObject(element_class=Alias)
class CodeListItem(OE.ODMElement):
""" represents ODM CodeListItem element that is a child of CodeList and can serialize as JSON or XML """
CodedValue = T.String(required=True)
Rank = T.Float(required=False)
OrderNumber = T.Integer(required=False)
Decode = T.ODMObject(element_class=Decode)
Alias = T.ODMListObject(element_class=Alias)
class ItemGroupDef(OE.ODMElement):
""" represents ODM v2.0 ItemGroupDef and can serialize as JSON or XML"""
OID = T.OID(required=True)
Name = T.Name(required=True)
Repeating = T.ValueSetString(required=True)
Type = T.ValueSetString()
IsReferenceData = T.ValueSetString(required=False)
DatasetName = T.Name()
Domain = T.String()
Purpose = T.String()
CommentOID = T.OIDRef()
Description = T.ODMObject(element_class=Description)
ItemGroupRef = T.ODMListObject(element_class=ItemGroupRef)
ItemRef = T.ODMListObject(element_class=ItemRef)
WorkflowRef = T.ODMListObject(element_class=WorkflowRef)
Origin = T.ODMListObject(element_class=Origin)
Alias = T.ODMListObject(element_class=Alias)
def __len__(self):
return len(self.ItemRef)
def __getitem__(self, position):
return self.ItemRef[position]
def __iter__(self):
return iter(self.ItemRef)
class RangeCheck(OE.ODMElement):
""" represents ODM v2.0 RangeCheck element that is a child of ItemDef and can serialize as JSON or XML """
Comparator = T.ValueSetString(required=False)
SoftHard = T.ValueSetString()
CheckValue = T.ODMListObject(element_class=CheckValue)
FormalExpression = T.ODMListObject(element_class=FormalExpression)
ErrorMessage = T.ODMObject(element_class=ErrorMessage)
class MetaDataVersion(OE.ODMElement):
OID = T.OID(required=True)
Name = T.Name(required=True)
Description = T.ODMObject(element_class=Description)
Include = T.ODMObject(element_class=Include)
Protocol = T.ODMObject(element_class=Protocol)
StudyStructure = T.ODMObject(element_class=StudyStructure)
WorkflowDef = T.ODMListObject(element_class=WorkflowDef)
StudyTiming = T.ODMObject(element_class=StudyTiming)
StudyEventGroupDef = T.ODMListObject(element_class=StudyEventGroupDef)
StudyEventDef = T.ODMListObject(element_class=StudyEventDef)
ItemGroupDef = T.ODMListObject(element_class=ItemGroupDef)
ItemDef = T.ODMListObject(element_class=ItemDef)
CodeList = T.ODMListObject(element_class=CodeList)
ConditionDef = T.ODMListObject(element_class=ConditionDef)
MethodDef = T.ODMListObject(element_class=MethodDef)
class MethodDef(OE.ODMElement):
OID = T.OID(required=True)
Name = T.Name(required=True)
Type = T.ValueSetString(required=True)
Description = T.ODMObject(required=True, element_class=Description)
FormalExpression = T.ODMListObject(element_class=FormalExpression)
Alias = T.ODMListObject(element_class=Alias)
class ItemDef(OE.ODMElement):
""" represents ODM v2.0 ItemDef and can serialize as JSON or XML - ordering of properties matters """
OID = T.OID(required=True)
Name = T.Name(required=True)
DataType = T.ValueSetString(required=True)
Length = T.PositiveInteger()
FractionDigits = T.NonNegativeInteger()
DatasetVarName = T.Name()
SDSVarName = T.SASName()
CommentOID = T.String()
Description = T.ODMObject(element_class=Description)
Question = T.ODMObject(element_class=Question)
ExternalQuestion = T.ODMObject(element_class=ExternalQuestion)
MeasurementUnitRef = T.ODMListObject(element_class=MeasurementUnitRef)
RangeCheck = T.ODMListObject(element_class=RangeCheck)
CodeListRef = T.ODMObject(element_class=CodeListRef)
Alias = T.ODMListObject(element_class=Alias)
class StudyEventData(OE.ODMElement):
StudyEventOID = T.OIDRef(required=True)
StudyEventRepeatKey = T.String(required=False)
TransactionType = T.ValueSetString(required=False)
AuditRecord = T.ODMObject(required=False, element_class=AuditRecord)
Signature = T.ODMObject(required=False, element_class=Signature)
Annotation = T.ODMListObject(required=False, element_class=Annotation)
FormData = T.ODMListObject(required=False, element_class=FormData)
def __len__(self):
return len(self.FormData)
def __getitem__(self, position):
return self.FormData[position]
def __iter__(self):
return iter(self.FormData)
class DurationTimingConstraint(OE.ODMElement):
OID = T.OID(required=True)
Name = T.Name(required=True)
StructuralElementOID = T.OIDRef(required=True)
DurationTarget = T.DurationDateTimeString(required=True)
DurationPreWindow = T.DurationDateTimeString(required=True)
DurationPostWindow = T.DurationDateTimeString(required=True)
Description = T.ODMObject(element_class=Description)
class Study(OE.ODMElement):
""" v2.0 """
OID = T.String(required=True)
StudyName = T.String(required=True)
ProtocolName = T.String(required=True)
Description = T.ODMObject(required=True, element_class=Description)
MetaDataVersion = T.ODMListObject(required=False,
element_class=MetaDataVersion)
class ItemDef(OE.ODMElement):
OID = T.OID(required=True)
Name = T.Name(required=True)
DataType = T.ValueSetString(required=True)
Length = T.PositiveInteger()
SignificantDigits = T.NonNegativeInteger()
SASFieldName = T.SASName()
SDSVarName = T.SASName()
Origin = T.String()
Comment = T.String()
Description = T.ODMObject(element_class=Description)
Question = T.ODMObject(element_class=Question)
ExternalQuestion = T.ODMObject(element_class=ExternalQuestion)
MeasurementUnitRef = T.ODMListObject(element_class=MeasurementUnitRef)
RangeCheck = T.ODMListObject(element_class=RangeCheck)
CodeListRef = T.ODMObject(element_class=CodeListRef)
Alias = T.ODMListObject(element_class=Alias)
class CodeList(OE.ODMElement):
OID = T.OID(required=True)
Name = T.Name(required=True)
DataType = T.ValueSetString(required=True)
ExtCodeID = T.String(required=True, namespace="nciodm")
CodeListExtensible = T.ValueSetString(required=True, namespace="nciodm")
Description = T.ODMObject(element_class=Description)
EnumeratedItem = T.ODMListObject(element_class=EnumeratedItem)
CDISCSubmissionValue = T.ODMObject(required=True,
element_class=CDISCSubmissionValue,
namespace="nciodm")
CDISCSynonym = T.ODMObject(required=True,
element_class=CDISCSynonym,
namespace="nciodm")
PreferredTerm = T.ODMObject(required=True,
element_class=PreferredTerm,
namespace="nciodm")
class AbsoluteTimingConstraint(OE.ODMElement):
OID = T.OID(required=True)
Name = T.Name(required=True)
StudyEventGroupOID = T.OIDRef()
StudyEventOID = T.OIDRef()
TimepointTarget = T.IncompleteDateTimeString(required=True)
TimepointPreWindow = T.DurationDateTimeString(required=True)
TimepointPostWindow = T.DurationDateTimeString(required=True)
Description = T.ODMObject(element_class=Description)
class TransitionTimingConstraint(OE.ODMElement):
OID = T.OID(required=True)
Name = T.Name(required=True)
TransitionOID = T.OIDRef(required=True)
TimepointRelativeTarget = T.DurationDateTimeString(required=True)
MethodOID = T.OIDRef()
TimepointPreWindow = T.DurationDateTimeString(required=True)
TimepointPostWindow = T.DurationDateTimeString(required=True)
Description = T.ODMObject(element_class=Description)
class ItemGroupData(OE.ODMElement):
ItemGroupOID = T.OIDRef(required=True)
ItemGroupRepeatKey = T.String(required=False)
TransactionType = T.ValueSetString(required=False)
AuditRecord = T.ODMObject(required=False, element_class=AuditRecord)
Signature = T.ODMObject(required=False, element_class=Signature)
ArchiveLayout = T.ODMObject(required=False, element_class=ArchiveLayout)
Annotation = T.ODMListObject(required=False, element_class=Annotation)
ItemData = T.ODMListObject(required=False, element_class=ItemData)
def __len__(self):
return len(self.ItemData)
def __getitem__(self, position):
return self.ItemData[position]
def __iter__(self):
return iter(self.ItemData)
