def test_inferred_ancestry_section_parsing():
"""inferred ancestry section correctly parsed."""
result = parse_structure_results(STRUCTURE_OUT_TEXT)
ia = result['inferred_ancestry']
assert isinstance(ia, list)
assert 150 == len(ia)
for l in ia:
assert isinstance(l, dict)
assert l.has_key('label')
assert l.has_key('missing')
assert l.has_key('pop')
assert l.has_key('probs')
assert l.has_key('usedpop')
probs = l['probs']
assert isinstance(probs, list)
assert 2 == len(probs)
# some spot checks...
assert 1.000 == ia[0]['probs'][0]
assert 0.000 == ia[0]['probs'][1]
assert 0.998 == ia[10]['probs'][0]
assert 0.002 == ia[10]['probs'][1]
assert 0.000 == ia[50]['probs'][0]
assert 1.000 == ia[50]['probs'][1]
assert 0.001 == ia[99]['probs'][0]
assert 0.999 == ia[99]['probs'][1]
assert 0.513 == ia[100]['probs'][0]
assert 0.487 == ia[100]['probs'][1]
def test_keys_of_parsed_result_dict():
"""dict from parser has proper keys."""
result = parse_structure_results(STRUCTURE_OUT_TEXT)
# note, most of this remains to be implemented
#assert result.has_key('version')
#assert result.has_key('run_parameters')
#assert result.has_key('membership_proportions')
#assert result.has_key('allele_frequency_divergence')
#assert result.has_key('ln_prob_of_data')
#assert result.has_key('mean_ln_likelihood')
#assert result.has_key('var_ln_likelihood')
#assert result.has_key('mean_alpha')
#assert result.has_key('fsts')
assert result.has_key('inferred_ancestry')
def test_parser_returns_proper_type():
"""parser returns a dict."""
result = parse_structure_results(STRUCTURE_OUT_TEXT)
assert isinstance(result, dict)
