def rating_userA(request, userA, groupA):
"""
Returns new OMERO Rating
"""
rating = LongAnnotationI()
ctx = {'omero.group': native_str(groupA.id.val)}
rating.longValue = rlong(4)
rating.ns = rstring(omero.constants.metadata.NSINSIGHTRATING)
rating = get_update_service(userA).saveAndReturnObject(rating, ctx)
return rating
def fileset_with_images_and_annotations(request, gatewaywrapper):
gatewaywrapper.loginAsAuthor()
update_service = gatewaywrapper.gateway.getUpdateService()
fileset = create_fileset()
comment_annotation = CommentAnnotationI()
comment_annotation.ns = rstring("comment_annotation")
comment_annotation.textValue = rstring("textValue")
long_annotation = LongAnnotationI()
long_annotation.ns = rstring("long_annotation")
long_annotation.longValue = rlong(1L)
fileset.linkAnnotation(comment_annotation)
fileset.linkAnnotation(long_annotation)
fileset = update_service.saveAndReturnObject(fileset)
return gatewaywrapper.gateway.getObject("Fileset", fileset.id.val)
def fileset_with_images_and_annotations(request, gatewaywrapper):
gatewaywrapper.loginAsAuthor()
update_service = gatewaywrapper.gateway.getUpdateService()
fileset = create_fileset()
comment_annotation = CommentAnnotationI()
comment_annotation.ns = rstring('comment_annotation')
comment_annotation.textValue = rstring('textValue')
long_annotation = LongAnnotationI()
long_annotation.ns = rstring('long_annotation')
long_annotation.longValue = rlong(1L)
fileset.linkAnnotation(comment_annotation)
fileset.linkAnnotation(long_annotation)
fileset = update_service.saveAndReturnObject(fileset)
return gatewaywrapper.gateway.getObject('Fileset', fileset.id.val)
def link_tags(conn, datasetname, image_tag_links, image_ratings):
for i in range(1, 51):
username = "******" % i
print(username)
exp = conn.getAdminService().lookupExperimenter(username)
exp_id = exp.id.val
dataset = conn.getObject("Dataset",
attributes={'name': datasetname},
opts={'owner': exp_id})
if dataset is None:
print("Dataset not found")
continue
links = []
for image in dataset.listChildren():
name = image.name
if name in image_tag_links:
for tag_id in image_tag_links[name]:
link = ImageAnnotationLinkI()
link.parent = ImageI(image.id, False)
link.child = TagAnnotationI(tag_id, False)
link.details.owner = ExperimenterI(exp_id, False)
links.append(link)
if name in image_ratings:
link = ImageAnnotationLinkI()
link.parent = ImageI(image.id, False)
r = LongAnnotationI()
r.ns = rstring(RATING_NS)
r.longValue = rlong(image_ratings[name])
link.child = r
link.details.owner = ExperimenterI(exp_id, False)
links.append(link)
print('links', len(links))
group_id = dataset.getDetails().getGroup().id
conn.SERVICE_OPTS.setOmeroGroup(group_id)
try:
conn.getUpdateService().saveArray(links, conn.SERVICE_OPTS)
except ValidationException:
print("Failed to link for %s" % username)
def add_annotations(o):
'''
Annotation
BasicAnnotation
BooleanAnnotation
BooleanAnnotationI
NumericAnnotation
DoubleAnnotation
DoubleAnnotationI
LongAnnotation
LongAnnotationI
TermAnnotation
TermAnnotationI
TimestampAnnotation
TimestampAnnotationI
ListAnnotation
ListAnnotationI
MapAnnotation
MapAnnotationI
TextAnnotation
CommentAnnotation
CommentAnnotationI
TagAnnotation
TagAnnotationI
XmlAnnotation
XmlAnnotationI
TypeAnnotation
FileAnnotation
FileAnnotationI
'''
annotation = BooleanAnnotationI()
annotation.description = rstring('the_description')
annotation.ns = rstring('boolean_annotation')
annotation.boolValue = rbool(True)
o.linkAnnotation(annotation)
annotation = CommentAnnotationI()
annotation.description = rstring('the_description')
annotation.ns = rstring('comment_annotation')
annotation.textValue = rstring('text_value')
o.linkAnnotation(annotation)
annotation = DoubleAnnotationI()
annotation.description = rstring('the_description')
annotation.ns = rstring('double_annotation')
annotation.doubleValue = rdouble(1.0)
o.linkAnnotation(annotation)
annotation = LongAnnotationI()
annotation.description = rstring('the_description')
annotation.ns = rstring('long_annotation')
annotation.longValue = rlong(1L)
o.linkAnnotation(annotation)
annotation = MapAnnotationI()
annotation.description = rstring('the_description')
annotation.ns = rstring('map_annotation')
annotation.setMapValue([NamedValue('a', '1'), NamedValue('b', '2')])
o.linkAnnotation(annotation)
annotation = TagAnnotationI()
annotation.description = rstring('the_description')
annotation.ns = rstring('tag_annotation')
annotation.textValue = rstring('tag_value')
o.linkAnnotation(annotation)
annotation = TermAnnotationI()
annotation.description = rstring('the_description')
annotation.ns = rstring('term_annotation')
annotation.termValue = rstring('term_value')
o.linkAnnotation(annotation)
annotation = TimestampAnnotationI()
annotation.description = rstring('the_description')
annotation.ns = rstring('timestamp_annotation')
annotation.timeValue = rtime(1)
o.linkAnnotation(annotation)
annotation = XmlAnnotationI()
annotation.description = rstring('the_description')
annotation.ns = rstring('xml_annotation')
annotation.textValue = rstring('<xml_value></xml_value>')
o.linkAnnotation(annotation)