def run(self, args):
if not os.path.exists(args.file):
self.ctx.die(670, "No such file: %s" % args.file)
else:
client = self.ctx.conn(args)
store = SessionsStore()
srv, usr, uuid = store.get_current()
props = store.get(srv, usr, uuid)
from omero.scripts import parse_file
from omero.util.temp_files import create_path
path = create_path()
text = """
omero.host=%(omero.host)s
omero.user=%(omero.sess)s
omero.pass=%(omero.sess)s
"""
path.write_text(text % props)
params = parse_file(args.file)
m = self._parse_inputs(args, params)
for k, v in m.items():
if v is not None:
client.setInput(k, v)
p = self.ctx.popen([sys.executable, args.file], stdout=sys.stdout,
stderr=sys.stderr, ICE_CONFIG=str(path))
p.wait()
if p.poll() != 0:
self.ctx.die(p.poll(), "Execution failed.")
def run(self, args):
if not os.path.exists(args.file):
self.ctx.die(670, "No such file: %s" % args.file)
else:
client = self.ctx.conn(args)
store = SessionsStore()
srv, usr, uuid, port = store.get_current()
props = store.get(srv, usr, uuid)
from omero.scripts import parse_file
from omero.util.temp_files import create_path
path = create_path()
text = """
omero.host=%(omero.host)s
omero.user=%(omero.sess)s
omero.pass=%(omero.sess)s
"""
path.write_text(text % props)
params = parse_file(args.file)
m = self._parse_inputs(args, params)
for k, v in list(m.items()):
if v is not None:
client.setInput(k, v)
p = self.ctx.popen([sys.executable, args.file],
stdout=sys.stdout,
stderr=sys.stderr,
ICE_CONFIG=str(path))
p.wait()
if p.poll() != 0:
self.ctx.die(p.poll(), "Execution failed.")
def testValidateRoiMovieCall(self):
script = SCRIPTS / "figure_scripts" / "Movie_ROI_Figure.py"
params = parse_file(str(script))
inputs = {
"Merged_Colours": wrap(['Red', 'Green']),
"Image_Labels": wrap("Datasets"),
"Data_Type": wrap("Image"),
"IDs": wrap([long(1)])
}
errors = validate_inputs(params, inputs)
assert "" == errors, errors
def testValidateRoiMovieCall(self):
script = SCRIPTS / "figure_scripts" / "Movie_ROI_Figure.py"
params = parse_file(str(script))
inputs = {
"Merged_Colours": wrap(['Red', 'Green']),
"Image_Labels": wrap("Datasets"),
"Data_Type": wrap("Image"),
"IDs": wrap([long(1)])
}
errors = validate_inputs(params, inputs)
assert "" == errors, errors
def testParseAllOfficialScripts(self):
for script in SCRIPTS.walk("*.py"):
try:
parse_file(str(script))
except Exception, e:
assert False, "%s\n%s" % (script, e)
def testParseAllOfficialScripts(self):
for script in SCRIPTS.walk("*.py"):
try:
parse_file(str(script))
except Exception, e:
assert False, "%s\n%s" % (script, e)
def test_parse_all_official_scripts(self):
for script in SCRIPTS.walk("*.py"):
try:
parse_file(str(script))
except Exception as e:
assert False, "%s\n%s" % (script, e)
