Ejemplo n.º 1
0
 def addTagAs(self, user, project):
     """ Adds and links a Tag. """
     tag = TagAnnotationI()
     tag.setTextValue(rstring(self.tag_text))
     tag.setNs(rstring(self.tag_ns))
     tag = self.updateServices[user].saveAndReturnObject(tag)
     self.linkTagAs(user, project, tag)
     return tag
 def addTagAs(self, user, project):
     """ Adds and links a Tag. """
     tag = TagAnnotationI()
     tag.setTextValue(rstring(self.tag_text))
     tag.setNs(rstring(self.tag_ns))
     tag = self.updateServices[user].saveAndReturnObject(tag)
     self.linkTagAs(user, project, tag)
     return tag
Ejemplo n.º 3
0
def load(conn, filepath):
    """
    Import new tag(s) from json.
    """
    if filepath:
        fobj = open(filepath, "r")
    else:
        sys.stderr.write("Error: No file is given.\n")
        sys.exit(1)

    p = json.load(fobj)

    if fobj is not sys.stdin:
        fobj.close()

    update = conn.getUpdateService()
    tagList2 = []
    for tset in p:
        if "tag" in tset:
            tag = TagAnnotationI()
            tag.setTextValue(rstring(tset["tag"]))
            if tset["desc"]:
                tag.setDescription(rstring(tset["desc"]))
            tagList2.append(tag)
        #end if

        if "tagset" in tset:
            tagList = []
            for t in tset['tags']:
                tag = TagAnnotationI()

                tag.setTextValue(rstring(t["name"]))
                if t["desc"]:
                    tag.setDescription(rstring(t["desc"]))
                tagList.append(tag)
            #end for
            tagList = update.saveAndReturnArray(tagList)

            tag = TagAnnotationI()
            tag.setTextValue(rstring(tset["tagset"]))
            if tset["desc"]:
                tag.setDescription(rstring(tset["desc"]))
            tag.setNs(rstring(omero.constants.metadata.NSINSIGHTTAGSET))
            tag = update.saveAndReturnObject(tag)
            links = []
            for child in tagList:
                l = AnnotationAnnotationLinkI()
                l.setChild(child)
                l.setParent(tag)
                links.append(l)
            #end for
            update.saveAndReturnArray(links)
        #end if
    #end for
    update.saveAndReturnArray(tagList2)
 def makeTag(self):
     tag = TagAnnotationI()
     tag.setTextValue(rstring(self.tag_text))
     tag.setNs(rstring(self.tag_ns))
     return tag
 def makeTag(self):
     tag = TagAnnotationI()
     tag.setTextValue(rstring(self.tag_text))
     tag.setNs(rstring(self.tag_ns))
     return tag