def test_directory_hash(self):
"""Test that we can read a hashcode for a directory."""
test_dir = "testdata/thaga_janakari_gene_ds/hg19"
hasher = Hasher()
self.assertTrue(
hasher.create_hashcode_for_dir(
test_dir) == "cd04c3299a21ce5fbe1bb9dc0d73d907",
"Hashed directory did not match ground truth. (" +
hasher.create_hashcode_for_dir(test_dir) + ") for path: " +
os.path.abspath(test_dir))
def create_datasource_md5_file(datasource_dir):
"""datasource_dir should be the /db_dir/ds_name/genome_build.
For example,
create_datasource_md5_file("/home/user/my_db_dir/gaf/hg19")
"""
if datasource_dir.endswith('/'):
datasource_dir = datasource_dir[:-1]
md5_filename = os.path.abspath(datasource_dir) + ".md5"
logging.getLogger(__name__).info("md5 being written to: " + os.path.abspath(md5_filename))
hasher = Hasher()
hashcode = hasher.create_hashcode_for_dir(datasource_dir)
fp = file(md5_filename, "w")
fp.write(hashcode)
fp.close()
def test_directory_hash(self):
"""Test that we can read a hashcode for a directory."""
test_dir = "testdata/thaga_janakari_gene_ds/hg19"
hasher = Hasher()
self.assertTrue(hasher.create_hashcode_for_dir(test_dir)=="cd04c3299a21ce5fbe1bb9dc0d73d907", "Hashed directory did not match ground truth. (" + hasher.create_hashcode_for_dir(test_dir) + ") for path: " + os.path.abspath(test_dir))
