def test_go_rule_06():
assoc = make_annotation(goid="GO:0005575", evidence="HEP", aspect="C").associations[0]
test_result = qc.GoRule06().test(assoc, assocparser.AssocParserConfig(ontology=ontology))
assert test_result.result_type == qc.ResultType.ERROR
assoc.aspect = "P"
assoc.object.id = Curie.from_str("GO:0008150")
test_result = qc.GoRule06().test(assoc, assocparser.AssocParserConfig(ontology=ontology))
assert test_result.result_type == qc.ResultType.PASS
assoc.evidence.type = Curie.from_str("ECO:0000501")
test_result = qc.GoRule06().test(assoc, assocparser.AssocParserConfig(ontology=ontology))
assert test_result.result_type == qc.ResultType.PASS
def test_go_rule_06():
a = ["blah"] * 16
a[6] = "HEP"
a[8] = "C"
test_result = qc.GoRule06().test(a, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.ERROR
a = ["blah"] * 16
a[6] = "HEP"
a[8] = "P"
test_result = qc.GoRule06().test(a, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS
a = ["blah"] * 16
a[6] = "IEA"
a[8] = "P"
test_result = qc.GoRule06().test(a, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS
def test_go_rule_06():
a = ["blah"] * 15
a[3] = ""
a[4] = "GO:0005575" # Cellular component
a[6] = "HEP"
a[8] = "C"
a[13] = "20200303"
assoc = gafparser.to_association(a).associations[0]
test_result = qc.GoRule06().test(assoc, assocparser.AssocParserConfig(ontology=ontology))
assert test_result.result_type == qc.ResultType.ERROR
assoc.aspect = "P"
assoc.object.id = "GO:0008150"
test_result = qc.GoRule06().test(assoc, assocparser.AssocParserConfig(ontology=ontology))
assert test_result.result_type == qc.ResultType.PASS
assoc.evidence.type = "ECO:0000501"
test_result = qc.GoRule06().test(assoc, assocparser.AssocParserConfig(ontology=ontology))
assert test_result.result_type == qc.ResultType.PASS