def test_go_rules_15():
assoc = make_annotation(goid="GO:0044419",
taxon="taxon:123|taxon:456").associations[0]
ontology = ontol_factory.OntologyFactory().create(
"tests/resources/go-interspecies-20210520.json")
test_result = qc.GoRule15().test(assoc,
all_rules_config(ontology=ontology))
assert test_result.result_type == qc.ResultType.PASS
assoc.object.id = Curie.from_str("GO:1234567")
test_result = qc.GoRule15().test(assoc,
all_rules_config(ontology=ontology))
assert test_result.result_type == qc.ResultType.WARNING
assoc.object.id = Curie.from_str("GO:0002812")
test_result = qc.GoRule15().test(assoc,
all_rules_config(ontology=ontology))
assert test_result.result_type == qc.ResultType.PASS
assoc.object.id = Curie.from_str("GO:0044215")
assoc.object.id = Curie.from_str("NCBITaxon:123")
assoc.interacting_taxon = None # This is the important part, no interacting taxon
test_result = qc.GoRule15().test(assoc,
all_rules_config(ontology=ontology))
assert test_result.result_type == qc.ResultType.PASS
def test_go_rules_15():
a = ["blah"] * 15
a[3] = ""
a[4] = "GO:0044419"
a[6] = "IEA"
a[8] = "P"
a[12] = "taxon:123|taxon:456"
assoc = gafparser.to_association(a).associations[0]
test_result = qc.GoRule15().test(
assoc, assocparser.AssocParserConfig(ontology=ontology))
assert test_result.result_type == qc.ResultType.PASS
assoc.object.id = "GO:1234567"
test_result = qc.GoRule15().test(
assoc, assocparser.AssocParserConfig(ontology=ontology))
assert test_result.result_type == qc.ResultType.WARNING
assoc.object.id = "GO:0044215"
assoc.object.id = "NCBITaxon:123"
assoc.interacting_taxon = None # This is the important part, no interacting taxon
test_result = qc.GoRule15().test(
assoc, assocparser.AssocParserConfig(ontology=ontology))
assert test_result.result_type == qc.ResultType.PASS
def test_go_rules_15():
assoc = make_annotation(goid="GO:0044419", taxon="taxon:123|taxon:456").associations[0]
test_result = qc.GoRule15().test(assoc, assocparser.AssocParserConfig(ontology=ontology))
assert test_result.result_type == qc.ResultType.PASS
assoc.object.id = Curie.from_str("GO:1234567")
test_result = qc.GoRule15().test(assoc, assocparser.AssocParserConfig(ontology=ontology))
assert test_result.result_type == qc.ResultType.WARNING
assoc.object.id = Curie.from_str("GO:0044215")
assoc.object.id = Curie.from_str("NCBITaxon:123")
assoc.interacting_taxon = None # This is the important part, no interacting taxon
test_result = qc.GoRule15().test(assoc, assocparser.AssocParserConfig(ontology=ontology))
assert test_result.result_type == qc.ResultType.PASS
def test_go_rules_15():
a = ["blah"] * 16
a[4] = "GO:0044419"
a[12] = "taxon:123|taxon:456"
test_result = qc.GoRule15().test(
a, assocparser.AssocParserConfig(ontology=ontology))
assert test_result.result_type == qc.ResultType.PASS
a[4] = "GO:123456"
test_result = qc.GoRule15().test(
a, assocparser.AssocParserConfig(ontology=ontology))
assert test_result.result_type == qc.ResultType.WARNING
a[4] = "GO:0044215"
a[12] = "taxon:123"
test_result = qc.GoRule15().test(
a, assocparser.AssocParserConfig(ontology=ontology))
assert test_result.result_type == qc.ResultType.PASS