def test_gorule37():
a = ["blah"] * 15
a[3] = ""
a[6] = "IBA"
a[5] = "PMID:21873635"
a[8] = "P"
a[14] = "GO_Central"
assoc = gafparser.to_association(a).associations[0]
test_result = qc.GoRule37().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS
assoc.evidence.type = "ECO:0000305" # Rule doesn't apply, not IBA
test_result = qc.GoRule37().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS
assoc.evidence.type = "ECO:0000318"
assoc.evidence.has_supporting_reference = ["GO_REF:123"
] # IBA, but wrong ref
test_result = qc.GoRule37().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.ERROR
assoc.evidence.has_supporting_reference = ["PMID:21873635"]
assoc.provided_by = "Pascale" # IBA, but wrong assigned_by
test_result = qc.GoRule37().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.ERROR
def test_gorule37():
assoc = make_annotation(evidence="IBA", references="PMID:21873635", assigned_by="GO_Central").associations[0]
test_result = qc.GoRule37().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS
assoc.evidence.type = Curie.from_str("ECO:0000305") # Rule doesn't apply, not IBA
test_result = qc.GoRule37().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS
assoc.evidence.type = Curie.from_str("ECO:0000318")
assoc.evidence.has_supporting_reference = [Curie.from_str("GO_REF:123")] # IBA, but wrong ref
test_result = qc.GoRule37().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.ERROR
assoc.evidence.has_supporting_reference = [Curie.from_str("PMID:21873635")]
assoc.provided_by = "Pascale" # IBA, but wrong assigned_by
test_result = qc.GoRule37().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.ERROR
def test_gorule36():
a = ["blah"] * 16
a[6] = "IBA"
a[5] = "PMID:21873635"
a[14] = "GO_Central"
test_result = qc.GoRule37().test(a, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS
a[6] = "BLA" # Rule doesn't apply
test_result = qc.GoRule37().test(a, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS
a[6] = "IBA"
a[5] = "GO_REF:123" # IBA, but wrong ref
test_result = qc.GoRule37().test(a, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.ERROR
a[5] = "PMID:21873635"
a[14] = "Pascale" # IBA, but wrong assigned_by
test_result = qc.GoRule37().test(a, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.ERROR