def test_gorule42():
assoc = make_annotation(qualifier="NOT", evidence="IKR").associations[0]
test_result = qc.GoRule42().test(assoc, all_rules_config())
assert test_result.result_type == qc.ResultType.PASS
assoc.evidence.type = "ECO:0000305" # Not IKR so this rule is fine
test_result = qc.GoRule42().test(assoc, all_rules_config())
assert test_result.result_type == qc.ResultType.PASS
assoc.evidence.type = "ECO:0000320"
assoc.negated = False # Not negated, so wrong
test_result = qc.GoRule42().test(assoc, all_rules_config())
assert test_result.result_type == qc.ResultType.ERROR
def test_gorule42():
a = ["blah"] * 16
a[6] = "IKR"
a[3] = "NOT"
test_result = qc.GoRule42().test(a, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS
a[6] = "BLA" # Not IKR so this rule is fine
test_result = qc.GoRule42().test(a, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS
a[6] = "IKR"
a[3] = "" # No NOT qualifier, so wrong
test_result = qc.GoRule42().test(a, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.ERROR
def test_gorule42():
a = ["blah"] * 15
a[3] = "NOT"
a[6] = "IKR"
a[8] = "P"
assoc = gafparser.to_association(a).associations[0]
test_result = qc.GoRule42().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS
assoc.evidence.type = "ECO:0000305" # Not IKR so this rule is fine
test_result = qc.GoRule42().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS
assoc.evidence.type = "ECO:0000320"
assoc.negated = False # Not negated, so wrong
test_result = qc.GoRule42().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.ERROR