def test_field_schema(self, patient_list):
patient_list.return_value = [test_patient_lists.TaggingTestPatientList]
expected = [
{'name': 'eater', 'title': 'Eater', 'type': 'boolean'},
{'type': 'boolean', 'name': 'herbivore', 'title': 'Herbivore'}
]
schema = Tagging.build_field_schema()
self.assertEqual(expected, schema)
def ever_tagged(self, team):
"""
Return a list of episodes that were ever tagged to TEAM
"""
from opal.models import Tagging
team_name = team.lower().replace(' ', '_')
current = self.filter(tagging__team__name=team_name)
historic = Tagging.historic_episodes_for_tag(team_name)
return list(historic) + list(current)
def ever_tagged(self, team):
"""
Return a list of episodes that were ever tagged to TEAM
"""
from opal.models import Tagging
team_name = team.lower().replace(' ', '_')
current = self.filter(tagging__team__name=team_name)
historic = Tagging.historic_episodes_for_tag(team_name)
return list(historic) + list(current)
def test_form_template(self):
self.assertEqual('tagging_modal.html', Tagging.get_form_template())
def test_display_template(self):
self.assertEqual('tagging.html', Tagging.get_display_template())
def test_form_template(self):
self.assertEqual('tagging_modal.html', Tagging.get_form_template())
def test_display_template(self):
self.assertEqual('tagging.html', Tagging.get_display_template())
def test_tagging_import_from_reversion(self):
import reversion
from django.db import transaction
patient = Patient.objects.create()
with transaction.atomic(), reversion.create_revision():
team_1 = Team.objects.create(name='team 1', title='team 1')
team_2 = Team.objects.create(name='team 2', title='team 2')
mine = Team.objects.create(name='mine', title='mine')
user_1 = self.user
user_2 = User.objects.create(username="******",
is_staff=False,
is_superuser=False)
# episode 1 has a tag and an archived tag
episode_1 = patient.create_episode(category="testepisode", )
# episode 2 had 1 tag, it was deleted, then it was readded
episode_2 = patient.create_episode(category="testepisode", )
# episode 3 has 2 tags and no new tags
episode_3 = patient.create_episode(category="testepisode", )
# episode 4 has no tags and 2 deleted tags
episode_4 = patient.create_episode(category="testepisode", )
# episode 5 has only user tags, 1 is deleted the other is not
episode_5 = patient.create_episode(category="testepisode", )
# episode 6 has only 1 user tag which has been deleted and replaced
episode_6 = patient.create_episode(category="testepisode", )
# episode 7 has a mixture of both types of user tags and episode tags
episode_7 = patient.create_episode(category="testepisode", )
# episode 1
Tagging.objects.create(episode=episode_1, team=team_1)
deleted_tag = Tagging.objects.create(episode=episode_1,
team=team_2)
with transaction.atomic(), reversion.create_revision():
deleted_tag.delete()
with transaction.atomic(), reversion.create_revision():
deleted_tag = Tagging.objects.create(episode=episode_2,
team=team_1)
with transaction.atomic(), reversion.create_revision():
deleted_tag.delete()
# episode 2
Tagging.objects.create(episode=episode_2, team=team_1)
# episode 3
Tagging.objects.create(episode=episode_3, team=team_1)
Tagging.objects.create(episode=episode_3, team=team_2)
# episode 4
to_delete_1 = Tagging.objects.create(episode=episode_4,
team=team_1)
to_delete_2 = Tagging.objects.create(episode=episode_4,
team=team_2)
with transaction.atomic(), reversion.create_revision():
to_delete_1.delete()
to_delete_2.delete()
# episode 5
with transaction.atomic(), reversion.create_revision():
Tagging.objects.create(episode=episode_5, team=mine, user=user_1)
to_delete = Tagging.objects.create(episode=episode_5,
team=mine,
user=user_2)
with transaction.atomic(), reversion.create_revision():
to_delete.delete()
# episode 6
with transaction.atomic(), reversion.create_revision():
to_delete = Tagging.objects.create(episode=episode_6,
team=mine,
user=user_1)
with transaction.atomic(), reversion.create_revision():
to_delete.delete()
with transaction.atomic(), reversion.create_revision():
Tagging.objects.create(episode=episode_6, team=mine, user=user_1)
# episode 7
with transaction.atomic(), reversion.create_revision():
Tagging.objects.create(episode=episode_7, team=mine, user=user_1)
to_delete_1 = Tagging.objects.create(episode=episode_7,
team=mine,
user=user_2)
Tagging.objects.create(episode=episode_7, team=team_1)
to_delete_2 = Tagging.objects.create(episode=episode_7,
team=team_2)
with transaction.atomic(), reversion.create_revision():
to_delete_1.delete()
to_delete_2.delete()
Tagging.import_from_reversion()
self.assertTrue(
Tagging.objects.filter(episode=episode_1,
team=team_1,
archived=False).exists())
self.assertTrue(
Tagging.objects.filter(episode=episode_1,
team=team_2,
archived=True).exists())
self.assertEqual(Tagging.objects.filter(episode=episode_1).count(), 2)
self.assertTrue(
Tagging.objects.filter(episode=episode_2,
team=team_1,
archived=False).exists())
self.assertEqual(Tagging.objects.filter(episode=episode_2).count(), 1)
self.assertTrue(
Tagging.objects.filter(episode=episode_3,
team=team_1,
archived=False).exists())
self.assertTrue(
Tagging.objects.filter(episode=episode_3,
team=team_2,
archived=False).exists())
self.assertEqual(Tagging.objects.filter(episode=episode_1).count(), 2)
self.assertTrue(
Tagging.objects.filter(episode=episode_4,
team=team_1,
archived=True).exists())
self.assertTrue(
Tagging.objects.filter(episode=episode_4,
team=team_2,
archived=True).exists())
self.assertEqual(Tagging.objects.filter(episode=episode_1).count(), 2)
self.assertTrue(
Tagging.objects.filter(episode=episode_5,
team=mine,
user=user_1,
archived=False).exists())
self.assertTrue(
Tagging.objects.filter(episode=episode_5,
team=mine,
user=user_2,
archived=True).exists())
self.assertEqual(Tagging.objects.filter(episode=episode_5).count(), 2)
self.assertTrue(
Tagging.objects.filter(episode=episode_6,
team=mine,
user=user_1,
archived=False).exists())
self.assertEqual(Tagging.objects.filter(episode=episode_6).count(), 1)
self.assertTrue(
Tagging.objects.filter(episode=episode_7,
team=mine,
user=user_1,
archived=False).exists())
self.assertTrue(
Tagging.objects.filter(episode=episode_7,
team=mine,
user=user_2,
archived=True).exists())
self.assertTrue(
Tagging.objects.filter(episode=episode_7,
team=team_1,
archived=False).exists())
self.assertTrue(
Tagging.objects.filter(episode=episode_7,
team=team_2,
archived=True).exists())
self.assertEqual(Tagging.objects.filter(episode=episode_7).count(), 4)
def test_field_schema(self):
names = ['eater', 'herbivore', 'carnivore']
fields = [{'name': tagname, 'type': 'boolean'} for tagname in names]
schema = Tagging.build_field_schema()
for field in fields:
self.assertIn(field, schema)
def test_tagging_import(self):
import reversion
from django.db import transaction
patient = Patient.objects.create()
with transaction.atomic(), reversion.create_revision():
team_1 = Team.objects.create(name='team 0', title='team 1')
team_2 = Team.objects.create(name='team 2', title='team 2')
mine = Team.objects.create(name='mine', title='mine')
user_1 = self.user
user_2 = User.objects.create(
username="******",
is_staff=False,
is_superuser=False
)
# episode 1 has a tag and an archived tag
episode_1 = patient.create_episode(
category="testepisode",
)
# episode 2 had 1 tag, it was deleted, then it was readded
episode_2 = patient.create_episode(
category="testepisode",
)
# episode 3 has 2 tags and no new tags
episode_3 = patient.create_episode(
category="testepisode",
)
# episode 4 has no tags and 2 deleted tags
episode_4 = patient.create_episode(
category="testepisode",
)
# episode 5 has only user tags, 1 is deleted the other is not
episode_5 = patient.create_episode(
category="testepisode",
)
# episode 6 has only 1 user tag which has been deleted and replaced
episode_6 = patient.create_episode(
category="testepisode",
)
# episode 7 has a mixture of both types of user tags and episode tags
episode_7 = patient.create_episode(
category="testepisode",
)
# episode 1
Tagging.objects.create(episode=episode_1, team=team_1)
deleted_tag = Tagging.objects.create(episode=episode_1, team=team_2)
with transaction.atomic(), reversion.create_revision():
deleted_tag.delete()
with transaction.atomic(), reversion.create_revision():
deleted_tag = Tagging.objects.create(episode=episode_2, team=team_1)
with transaction.atomic(), reversion.create_revision():
deleted_tag.delete()
# episode 2
Tagging.objects.create(episode=episode_2, team=team_1)
# episode 3
Tagging.objects.create(episode=episode_3, team=team_1)
Tagging.objects.create(episode=episode_3, team=team_2)
# episode 4
to_delete_1 = Tagging.objects.create(episode=episode_4, team=team_1)
to_delete_2 = Tagging.objects.create(episode=episode_4, team=team_2)
with transaction.atomic(), reversion.create_revision():
to_delete_1.delete()
to_delete_2.delete()
# episode 5
with transaction.atomic(), reversion.create_revision():
Tagging.objects.create(episode=episode_5, team=mine, user=user_1)
to_delete = Tagging.objects.create(episode=episode_5, team=mine, user=user_2)
with transaction.atomic(), reversion.create_revision():
to_delete.delete()
# episode 6
with transaction.atomic(), reversion.create_revision():
to_delete = Tagging.objects.create(episode=episode_6, team=mine, user=user_1)
with transaction.atomic(), reversion.create_revision():
to_delete.delete()
with transaction.atomic(), reversion.create_revision():
Tagging.objects.create(episode=episode_6, team=mine, user=user_1)
# episode 7
with transaction.atomic(), reversion.create_revision():
Tagging.objects.create(episode=episode_7, team=mine, user=user_1)
to_delete_1 = Tagging.objects.create(episode=episode_7, team=mine, user=user_2)
Tagging.objects.create(episode=episode_7, team=team_1)
to_delete_2 = Tagging.objects.create(episode=episode_7, team=team_2)
with transaction.atomic(), reversion.create_revision():
to_delete_1.delete()
to_delete_2.delete()
Tagging.import_from_reversion()
self.assertTrue(Tagging.objects.filter(
episode=episode_1, team=team_1, archived=False
).exists()
)
self.assertTrue(Tagging.objects.filter(
episode=episode_1, team=team_2, archived=True
).exists()
)
self.assertEqual(Tagging.objects.filter(episode=episode_1).count(), 2)
self.assertTrue(Tagging.objects.filter(
episode=episode_2, team=team_1, archived=False
).exists()
)
self.assertEqual(Tagging.objects.filter(episode=episode_2).count(), 1)
self.assertTrue(Tagging.objects.filter(
episode=episode_3, team=team_1, archived=False
).exists()
)
self.assertTrue(Tagging.objects.filter(
episode=episode_3, team=team_2, archived=False
).exists()
)
self.assertEqual(Tagging.objects.filter(episode=episode_1).count(), 2)
self.assertTrue(Tagging.objects.filter(
episode=episode_4, team=team_1, archived=True
).exists()
)
self.assertTrue(Tagging.objects.filter(
episode=episode_4, team=team_2, archived=True
).exists()
)
self.assertEqual(Tagging.objects.filter(episode=episode_1).count(), 2)
self.assertTrue(Tagging.objects.filter(
episode=episode_5, team=mine, user=user_1, archived=False
).exists()
)
self.assertTrue(Tagging.objects.filter(
episode=episode_5, team=mine, user=user_2, archived=True
).exists()
)
self.assertEqual(Tagging.objects.filter(episode=episode_5).count(), 2)
self.assertTrue(Tagging.objects.filter(
episode=episode_6, team=mine, user=user_1, archived=False
).exists()
)
self.assertEqual(Tagging.objects.filter(episode=episode_6).count(), 1)
self.assertTrue(Tagging.objects.filter(
episode=episode_7, team=mine, user=user_1, archived=False
).exists()
)
self.assertTrue(Tagging.objects.filter(
episode=episode_7, team=mine, user=user_2, archived=True
).exists()
)
self.assertTrue(Tagging.objects.filter(
episode=episode_7, team=team_1, archived=False
).exists()
)
self.assertTrue(Tagging.objects.filter(
episode=episode_7, team=team_2, archived=True
).exists()
)
self.assertEqual(Tagging.objects.filter(episode=episode_7).count(), 4)
def serialised(self,
user,
episodes,
historic_tags=False,
episode_history=False):
"""
Return a set of serialised EPISODES.
If HISTORIC_TAGS is Truthy, return deleted tags as well.
If EPISODE_HISTORY is Truthy return historic episodes as well.
"""
patient_ids = [e.patient_id for e in episodes]
patient_subs = defaultdict(lambda: defaultdict(list))
episode_subs = self.serialised_episode_subrecords(episodes, user)
for model in patient_subrecords():
name = model.get_api_name()
subrecords = model.objects.filter(patient__in=patient_ids)
for sub in subrecords:
patient_subs[sub.patient_id][name].append(sub.to_dict(user))
# We do this here because it's an order of magnitude quicker than hitting
# episode.tagging_dict() for each episode in a loop.
taggings = defaultdict(dict)
from opal.models import Tagging
for tag in Tagging.objects.filter(
episode__in=episodes).select_related('team'):
if tag.team.name == 'mine' and tag.user != user:
continue
taggings[tag.episode_id][tag.team.name] = True
serialised = []
for e in episodes:
d = {
'id': e.id,
'category': e.category,
'active': e.active,
'date_of_admission': e.date_of_admission,
'date_of_episode': e.date_of_episode,
'discharge_date': e.discharge_date,
'consistency_token': e.consistency_token
}
for key, value in episode_subs[e.id].items():
d[key] = value
for key, value in patient_subs[e.patient_id].items():
d[key] = value
d['tagging'] = [taggings[e.id]]
serialised.append(d)
if episode_history:
d['episode_history'] = e._episode_history_to_dict(user)
if historic_tags:
print 'Historic Tags'
historic = Tagging.historic_tags_for_episodes(episodes)
for episode in serialised:
if episode['id'] in historic:
historic_tags = historic[episode['id']]
for t in historic_tags.keys():
episode['tagging'][0][t] = True
return serialised
def serialised(self, user, episodes, historic_tags=False, episode_history=False):
"""
Return a set of serialised EPISODES.
If HISTORIC_TAGS is Truthy, return deleted tags as well.
If EPISODE_HISTORY is Truthy return historic episodes as well.
"""
patient_ids = [e.patient_id for e in episodes]
patient_subs = defaultdict(lambda: defaultdict(list))
episode_subs = self.serialised_episode_subrecords(episodes, user)
for model in patient_subrecords():
name = model.get_api_name()
subrecords = model.objects.filter(patient__in=patient_ids)
for sub in subrecords:
patient_subs[sub.patient_id][name].append(sub.to_dict(user))
# We do this here because it's an order of magnitude quicker than hitting
# episode.tagging_dict() for each episode in a loop.
taggings = defaultdict(dict)
from opal.models import Tagging
for tag in Tagging.objects.filter(episode__in=episodes).select_related('team'):
if tag.team.name == 'mine' and tag.user != user:
continue
taggings[tag.episode_id][tag.team.name] = True
serialised = []
for e in episodes:
d = {
'id' : e.id,
'category' : e.category,
'active' : e.active,
'date_of_admission': e.date_of_admission,
'date_of_episode' : e.date_of_episode,
'discharge_date' : e.discharge_date,
'consistency_token': e.consistency_token
}
for key, value in episode_subs[e.id].items():
d[key] = value
for key, value in patient_subs[e.patient_id].items():
d[key] = value
d['tagging'] = [taggings[e.id]]
serialised.append(d)
if episode_history:
d['episode_history'] = e._episode_history_to_dict(user)
if historic_tags:
print 'Historic Tags'
historic = Tagging.historic_tags_for_episodes(episodes)
for episode in serialised:
if episode['id'] in historic:
historic_tags = historic[episode['id']]
for t in historic_tags.keys():
episode['tagging'][0][t] = True
return serialised