def test_data_works_with_split_files(self):
test_file = os.path.dirname(os.path.realpath(__file__)) + "/../resources/test_without_records.nc"
test_ref_file = os.path.dirname(os.path.realpath(__file__)) + "/../resources/test_only_reference.nc"
data = Data(test_file, test_ref_file)
self.assertEqual(2, len(data.model_vars()))
self.assertTrue('chl' in data.model_vars())
self.assertTrue('sst' in data.model_vars())
self.assertEqual(1, len(data.ref_vars()))
self.assertTrue('chl_ref' in data.ref_vars())
self.assertEqual(4, len(data.reference_coordinate_variables()))
class Data_test(unittest.TestCase):
def setUp(self):
logging.basicConfig(level=logging.DEBUG)
self.test_file = os.path.dirname(os.path.realpath(__file__)) + "/../resources/test.nc"
self.data = Data(self.test_file)
def tearDown(self):
self.data.close()
logging.basicConfig(level=logging.WARNING)
def test_model_vars(self):
model_vars = self.data.model_vars()
assert_array_equal(np.array(['chl', 'sst']), model_vars)
def test_ref_vars(self):
ref_vars = self.data.ref_vars()
assert_array_equal(np.array(['chl_ref']), ref_vars)
def test_reference_records_count(self):
self.assertEqual(3, self.data.reference_records_count({'record_num'}))
def test_gridded_reference_records_count(self):
test_file = os.path.dirname(os.path.realpath(__file__)) + "/../resources/ogs_test_smaller.nc"
data = Data(test_file)
self.assertEqual(41 * 80, data.reference_records_count({'latitude', 'longitude'}))
def test_find_model_latitude_variable_name(self):
self.assertEqual('lat', self.data.find_model_latitude_variable_name())
test_file = os.path.dirname(os.path.realpath(__file__)) + "/../resources/ogs_test_smaller.nc"
data = Data(test_file)
self.assertEqual('latitude', data.find_model_latitude_variable_name())
def test_find_model_longitude_variable_name(self):
self.assertEqual('lon', self.data.find_model_longitude_variable_name())
test_file = os.path.dirname(os.path.realpath(__file__)) + "/../resources/ogs_test_smaller.nc"
data = Data(test_file)
self.assertEqual('longitude', data.find_model_longitude_variable_name())
def test_var_access(self):
chl_data = self.data.read_model('chl', [0, 0, 0, 0])
self.assertAlmostEqual(0.1111, chl_data)
def test_data_is_read_only_once_full_variable(self):
self.data.read_model('chl')
chl_data = self.data.read_model('chl', [0, 0, 0, 0])
self.assertAlmostEqual(0.1111, chl_data)
self.data.__getattribute__('chl')[0][0][0][0] = 0.5
chl_data = self.data.read_model('chl', [0, 0, 0, 0])
self.assertAlmostEqual(0.5, chl_data)
def test_data_works_with_split_files(self):
test_file = os.path.dirname(os.path.realpath(__file__)) + "/../resources/test_without_records.nc"
test_ref_file = os.path.dirname(os.path.realpath(__file__)) + "/../resources/test_only_reference.nc"
data = Data(test_file, test_ref_file)
self.assertEqual(2, len(data.model_vars()))
self.assertTrue('chl' in data.model_vars())
self.assertTrue('sst' in data.model_vars())
self.assertEqual(1, len(data.ref_vars()))
self.assertTrue('chl_ref' in data.ref_vars())
self.assertEqual(4, len(data.reference_coordinate_variables()))
def test_unit(self):
self.assertEqual('milligram m-3', self.data.unit('chl'))
self.assertEqual('kelvin', self.data.unit('sst'))
self.assertEqual('degrees_east', self.data.unit('lon_ref'))
self.assertIsNone(self.data.unit('var_without_unit'))
self.assertRaises(ValueError, lambda: self.data.unit('toad_count'))
def test_gridded_reference_data(self):
test_file = os.path.dirname(os.path.realpath(__file__)) + "/../resources/ogs_test_smaller.nc"
data = Data(test_file)
self.assertEqual(1, len(data.ref_vars()))
self.assertEqual('Ref_chl', data.ref_vars()[0])
def test_caching(self):
test_file = os.path.dirname(os.path.realpath(__file__)) + "/../resources/ogs_test_smaller.nc"
data = Data(test_file, None, 0.05)
data.read_model('chl')
self.assertTrue(hasattr(data, 'chl'))
data.read_model('dox')
self.assertTrue(hasattr(data, 'dox'))
self.assertFalse(hasattr(data, 'chl'))
data = Data(test_file, None, 2)
data.read_model('chl')
self.assertTrue(hasattr(data, 'chl'))
data.read_model('dox')
self.assertTrue(hasattr(data, 'dox'))
self.assertTrue(hasattr(data, 'chl'))
def test_compute_variable_size(self):
test_file = os.path.dirname(os.path.realpath(__file__)) + "/../resources/ogs_test_smaller.nc"
data = Data(test_file)
self.assertAlmostEqual(0.0250244140625, data.compute_variable_size('chl'))
self.assertAlmostEqual(0.0250244140625, data.compute_variable_size('dox'))
self.assertAlmostEqual(0.00030517578125, data.compute_variable_size('longitude'))
def test_get_data(self):
self.data.read_model('chl')
array = self.data.get_data([0, 0, 0, 0], 'chl')
assert_array_equal(np.array([0.1111], dtype='float32'), array)
array = self.data.get_data([1, 0, 1, 2], 'chl')
assert_array_equal(np.array([0.1223], dtype='float32'), array)
array = self.data.get_data([1, 0, 1, 3], 'chl')
assert_array_equal(np.array([0.2223], dtype='float32'), array)
def test_has_gridded_ref_var(self):
self.assertTrue(self.data.has_one_dim_ref_var())
test_file = os.path.dirname(os.path.realpath(__file__)) + "/../resources/ogs_test_smaller.nc"
data = Data(test_file)
self.assertFalse(data.has_one_dim_ref_var())
def test_get_differing_dim_names(self):
data = DataMock()
dim_indices = data.get_differing_dim_names('model_0', 'ref_0')
self.assertDictEqual({}, dim_indices)
dim_indices = data.get_differing_dim_names('model_0', 'ref_1')
self.assertDictEqual({'depth': 'depth_ref'}, dim_indices)
dim_indices = data.get_differing_dim_names('model_0', 'ref_2')
self.assertDictEqual({'time': 'time_ref', 'depth': 'depth_ref'}, dim_indices)
self.assertRaises(ValueError, lambda : data.get_differing_dim_names('model_0', 'ref_3'))
def test_get_slices(self):
data = DataMock()
model_values_slices, ref_values_slices = data.get_slices('model_0', 'ref_1')
self.assertListEqual([slice(None), slice(3, 4), slice(None), slice(None)], model_values_slices)
self.assertListEqual([slice(0, 5), slice(0, 1), slice(0, 5), slice(0, 10)], ref_values_slices)
def test_gridded_reference_data(self):
test_file = os.path.dirname(os.path.realpath(__file__)) + "/../resources/ogs_test_smaller.nc"
data = Data(test_file)
self.assertEqual(1, len(data.ref_vars()))
self.assertEqual('Ref_chl', data.ref_vars()[0])