def test_no_precisions_species_raises():
cgo_path = get_datapath(filename="capegrim-medusa.18.C", data_type="GC")
missing_species_prec = get_datapath(filename="capegrim-medusa.18.precisions.broke.C", data_type="GC")
with pytest.raises(ValueError):
parse_gcwerks(
data_filepath=cgo_path, precision_filepath=missing_species_prec, site="cgo", network="agage"
)
def test_read_invalid_instrument_raises():
thd_path = get_datapath(filename="trinidadhead.01.C", data_type="GC")
thd_prec_path = get_datapath(filename="trinidadhead.01.precisions.C", data_type="GC")
with pytest.raises(ValueError):
parse_gcwerks(
data_filepath=thd_path,
precision_filepath=thd_prec_path,
site="CGO",
instrument="fish",
network="agage",
)
def test_read_file_thd():
thd_path = get_datapath(filename="trinidadhead.01.C", data_type="GC")
thd_prec_path = get_datapath(filename="trinidadhead.01.precisions.C", data_type="GC")
gas_data = parse_gcwerks(
data_filepath=thd_path,
precision_filepath=thd_prec_path,
site="thd",
network="agage",
instrument="gcmd",
)
parsed_surface_metachecker(data=gas_data)
expected_keys = [
"ccl4_10m",
"cfc113_10m",
"cfc11_10m",
"cfc12_10m",
"ch3ccl3_10m",
"ch4_10m",
"chcl3_10m",
"n2o_10m",
]
assert sorted(list(gas_data.keys())) == expected_keys
meas_data = gas_data["ch3ccl3_10m"]["data"]
assert meas_data.time[0] == pd.Timestamp("2001-01-01T01:05:22.5")
assert meas_data.time[-1] == pd.Timestamp("2001-12-31T23:18:22.5")
assert meas_data["ch3ccl3"][0] == 41.537
assert meas_data["ch3ccl3"][-1] == 34.649
def test_read_ridgehill_window_inlet_all_NaNs():
data_path = get_datapath(filename="ridgehill-md.11.C", data_type="GC")
prec_path = get_datapath(filename="ridgehill-md.11.precisions.C", data_type="GC")
res = parse_gcwerks(
data_filepath=data_path, precision_filepath=prec_path, site="RGL", instrument="gcmd", network="agage"
)
assert not res
def cgo_data():
cgo_data = get_datapath(filename="capegrim-medusa.18.C", data_type="GC")
cgo_prec = get_datapath(filename="capegrim-medusa.18.precisions.C", data_type="GC")
gas_data = parse_gcwerks(
data_filepath=cgo_data,
precision_filepath=cgo_prec,
site="cgo",
instrument="medusa",
network="agage",
)
return gas_data
def thd_data():
thd_path = get_datapath(filename="trinidadhead.01.C", data_type="GC")
thd_prec_path = get_datapath(filename="trinidadhead.01.precisions.C", data_type="GC")
gas_data = parse_gcwerks(
data_filepath=thd_path,
precision_filepath=thd_prec_path,
site="THD",
instrument="medusa",
network="agage",
)
return gas_data
def test_read_thd_window_inlet():
data_path = get_datapath(filename="trinidadhead.01.window-inlet.C", data_type="GC")
prec_path = get_datapath(filename="trinidadhead.01.precisions.C", data_type="GC")
res = parse_gcwerks(
data_filepath=data_path, precision_filepath=prec_path, site="thd", instrument="gcmd", network="agage"
)
parsed_surface_metachecker(data=res)
data = res["ch4_10m"]["data"]
assert data.time[0] == pd.Timestamp("2001-01-01T01:05:22.5")
assert data.time[-1] == pd.Timestamp("2001-01-01T10:25:22.5")
assert data["ch4"][0] == pytest.approx(1818.62)
assert data["ch4"][-1] == pytest.approx(1840.432)
def test_read_shangdianzi_ASM_inlet():
data_path = get_datapath(filename="shangdianzi-medusa.18.C", data_type="GC")
prec_path = get_datapath(filename="shangdianzi-medusa.18.precisions.C", data_type="GC")
res = parse_gcwerks(
data_filepath=data_path,
precision_filepath=prec_path,
site="sdz",
instrument="medusa",
network="agage",
)
parsed_surface_metachecker(data=res)
data = res["nf3_80m"]["data"]
data.time[0] == pd.Timestamp("2018-01-16T09:10:00")
data.time[-1] == pd.Timestamp("2018-01-16T20:00:00")
data["nf3"][0] == pytest.approx(2.172)
data["nf3"][-1] == pytest.approx(2.061)
def test_recombination_GC():
get_local_bucket(empty=True)
data = get_datapath(filename="capegrim-medusa.18.C", data_type="GC")
precision = get_datapath(filename="capegrim-medusa.18.precisions.C",
data_type="GC")
ObsSurface.read_file((data, precision),
data_type="GCWERKS",
site="cgo",
network="agage")
data = parse_gcwerks(data_filepath=data,
precision_filepath=precision,
site="CGO",
instrument="medusa",
network="AGAGE")
toluene_data = data["c6h5ch3_70m"]["data"]
species = "c6h5ch3"
site = "CGO"
inlet = "70m"
result = search(species=species, site=site, inlet=inlet)
keys = result.keys(site=site, species=species, inlet=inlet)
toluene_data_recombined = recombine_datasets(keys=keys)
toluene_data.attrs = {}
toluene_data_recombined.attrs = {}
assert toluene_data.time.equals(toluene_data_recombined.time)
assert toluene_data["c6h5ch3"].equals(toluene_data_recombined["c6h5ch3"])
assert toluene_data["c6h5ch3_repeatability"].equals(
toluene_data_recombined["c6h5ch3_repeatability"])
assert toluene_data["c6h5ch3_status_flag"].equals(
toluene_data_recombined["c6h5ch3_status_flag"])
assert toluene_data["c6h5ch3_integration_flag"].equals(
toluene_data_recombined["c6h5ch3_integration_flag"])