def test_execute_function_apiv2(protocol,
protocol_file,
monkeypatch,
virtual_smoothie_env,
mock_get_attached_instr):
mock_get_attached_instr.return_value[types.Mount.LEFT]\
= {'config': load('p10_single_v1.5'), 'id': 'testid'}
mock_get_attached_instr.return_value[types.Mount.RIGHT]\
= {'config': load('p300_single_v1.5'), 'id': 'testid2'}
entries = []
def emit_runlog(entry):
nonlocal entries
entries.append(entry)
execute.execute(
protocol.filelike, 'testosaur_v2.py', emit_runlog=emit_runlog)
assert [item['payload']['text'] for item in entries
if item['$'] == 'before'] == [
'Picking up tip from A1 of Opentrons 96 Tip Rack 300 µL on 1',
'Aspirating 10.0 uL from A1 of Corning 96 Well Plate 360 µL Flat on 2 at 150.0 uL/sec', # noqa(E501),
'Dispensing 10.0 uL into B1 of Corning 96 Well Plate 360 µL Flat on 2 at 300.0 uL/sec', # noqa(E501),
'Dropping tip into H12 of Opentrons 96 Tip Rack 300 µL on 1'
]
def test_execute_function_json_v4_apiv2(get_json_protocol_fixture,
virtual_smoothie_env,
mock_get_attached_instr):
jp = get_json_protocol_fixture('4', 'simpleV4', False)
filelike = io.StringIO(jp)
entries = []
def emit_runlog(entry):
nonlocal entries
entries.append(entry)
mock_get_attached_instr.return_value[types.Mount.LEFT] = {
'model': 'p10_single_v1.5',
'id': 'testid'
}
execute.execute(filelike, 'simple.json', emit_runlog=emit_runlog)
assert [
item['payload']['text'] for item in entries if item['$'] == 'before'
] == [
'Picking up tip from B1 of Opentrons 96 Tip Rack 10 µL on 1',
'Aspirating 5.0 uL from A1 of Source Plate on 2 at 3.0 uL/sec',
'Delaying for 0 minutes and 42 seconds',
'Dispensing 4.5 uL into B1 of Dest Plate on 3 at 2.5 uL/sec',
'Touching tip', 'Blowing out at B1 of Dest Plate on 3',
'Dropping tip into A1 of Trash on 12'
]
def test_execute_function_bundle_apiv2(get_bundle_fixture,
virtual_smoothie_env, backing_hardware):
bundle = get_bundle_fixture('simple_bundle')
entries = []
def emit_runlog(entry):
nonlocal entries
entries.append(entry)
backing_hardware.return_value[types.Mount.LEFT] = {
'model': 'p10_single_v1.5',
'id': 'testid'
}
execute.execute(bundle['filelike'],
'simple_bundle.zip',
emit_runlog=emit_runlog)
assert [
item['payload']['text'] for item in entries if item['$'] == 'before'
] == [
'Transferring 1.0 from A1 of FAKE example labware on 1 to A4 of FAKE example labware on 1', # noqa(E501)
'Picking up tip from A1 of Opentrons 96 Tip Rack 10 µL on 3',
'Aspirating 1.0 uL from A1 of FAKE example labware on 1 at 1.0 speed',
'Dispensing 1.0 uL into A4 of FAKE example labware on 1 at 1.0 speed',
'Dropping tip into A1 of Opentrons Fixed Trash on 12',
'Transferring 2.0 from A1 of FAKE example labware on 1 to A4 of FAKE example labware on 1', # noqa(E501)
'Picking up tip from B1 of Opentrons 96 Tip Rack 10 µL on 3',
'Aspirating 2.0 uL from A1 of FAKE example labware on 1 at 1.0 speed',
'Dispensing 2.0 uL into A4 of FAKE example labware on 1 at 1.0 speed',
'Dropping tip into A1 of Opentrons Fixed Trash on 12',
'Transferring 3.0 from A1 of FAKE example labware on 1 to A4 of FAKE example labware on 1', # noqa(E501)
'Picking up tip from C1 of Opentrons 96 Tip Rack 10 µL on 3',
'Aspirating 3.0 uL from A1 of FAKE example labware on 1 at 1.0 speed',
'Dispensing 3.0 uL into A4 of FAKE example labware on 1 at 1.0 speed',
'Dropping tip into A1 of Opentrons Fixed Trash on 12'
]
def test_execute_function_v1(protocol, protocol_file,
virtual_smoothie_env,
mock_get_attached_instr):
entries = []
def emit_runlog(entry):
nonlocal entries
entries.append(entry)
mock_get_attached_instr.return_value[types.Mount.RIGHT] = {
'config': load('p300_single_v1.5'), 'id': 'testid'}
execute.execute(protocol.filelike, 'testosaur.py', emit_runlog=emit_runlog)
assert [item['payload']['text'] for item in entries
if item['$'] == 'before'] == [
'Picking up tip from well A1 in "5"',
'Aspirating 10.0 uL from well A1 in "8" at 150.0 uL/sec',
'Dispensing 10.0 uL into well H12 in "8" at 300.0 uL/sec',
'Aspirating 10.0 uL from well A1 in "11" at 150.0 uL/sec',
'Dispensing 10.0 uL into well H12 in "11" at 300.0 uL/sec',
'Dropping tip into well A1 in "12"'
]
def test_execute_function_v1(protocol, protocol_file, virtual_smoothie_env,
backing_hardware):
entries = []
def emit_runlog(entry):
nonlocal entries
entries.append(entry)
backing_hardware.return_value[types.Mount.RIGHT] = {
'model': 'p300_single_v1.5',
'id': 'testid'
}
execute.execute(protocol.filelike, 'testosaur.py', emit_runlog=emit_runlog)
assert [
item['payload']['text'] for item in entries if item['$'] == 'before'
] == [
'Picking up tip from well A1 in "5"',
'Aspirating 10.0 uL from well A1 in "8" at 1.0 speed',
'Dispensing 10.0 uL into well H12 in "8" at 1.0 speed',
'Aspirating 10.0 uL from well A1 in "11" at 1.0 speed',
'Dispensing 10.0 uL into well H12 in "11" at 1.0 speed',
'Dropping tip into well A1 in "12"'
]
def test_execute_extra_labware(protocol, protocol_file, monkeypatch,
virtual_smoothie_env, mock_get_attached_instr):
fixturedir = HERE / '..' / '..' / '..' /\
'shared-data' / 'labware' / 'fixtures' / '2'
entries = []
def emit_runlog(entry):
nonlocal entries
entries.append(entry)
mock_get_attached_instr.return_value[types.Mount.RIGHT] = {
'model': 'p300_single_v2.0',
'id': 'testid'
}
# make sure we can load labware explicitly
# make sure we don't have an exception from not finding the labware
execute.execute(protocol.filelike,
'custom_labware.py',
emit_runlog=emit_runlog,
custom_labware_paths=[str(fixturedir)])
# instead of 4 in simulate because we get before and after
assert len(entries) == 8
protocol.filelike.seek(0)
# make sure we don't get autoload behavior when not on a robot
with pytest.raises(ExceptionInProtocolError,
match='.*FileNotFoundError.*'):
execute.execute(protocol.filelike, 'custom_labware.py')
no_lw = execute.get_protocol_api('2.0')
assert not no_lw._extra_labware
protocol.filelike.seek(0)
monkeypatch.setattr(execute, 'IS_ROBOT', True)
monkeypatch.setattr(execute, 'JUPYTER_NOTEBOOK_LABWARE_DIR', fixturedir)
# make sure we don't have an exception from not finding the labware
entries = []
execute.execute(protocol.filelike,
'custom_labware.py',
emit_runlog=emit_runlog)
# instead of 4 in simulate because we get before and after
assert len(entries) == 8
# make sure the extra labware loaded by default is right
ctx = execute.get_protocol_api('2.0')
assert len(ctx._extra_labware.keys()) == len(os.listdir(fixturedir))
assert ctx.load_labware('fixture_12_trough', 1, namespace='fixture')
# if there is no labware dir, make sure everything still works
monkeypatch.setattr(execute, 'JUPYTER_NOTEBOOK_LABWARE_DIR',
HERE / 'nosuchdirectory')
ctx = execute.get_protocol_api('2.0')
with pytest.raises(FileNotFoundError):
ctx.load_labware("fixture_12_trough", 1, namespace='fixture')
