def __initialize_finish(self):
# Finalize the the widget's initialization (preferably after
# ensuring all required databases have been downloaded.
sets = geneset.list_all()
taxids = set(taxonomy.common_taxids() +
list(filter(None, [tid for _, tid, _ in sets])))
organisms = [(tid, name_or_none(tid)) for tid in taxids]
organisms = [(tid, name) for tid, name in organisms
if name is not None]
organisms = [(None, "None")] + sorted(organisms)
taxids = [tid for tid, _ in organisms]
names = [name for _, name in organisms]
self.taxid_list = taxids
self.speciesComboBox.clear()
self.speciesComboBox.addItems(names)
self.genesets = sets
if self.taxid in self.taxid_list:
taxid = self.taxid
else:
taxid = self.taxid_list[0]
self.taxid = None
self.setCurrentOrganism(taxid)
self.setBlocking(False)
self.__state = OWSetEnrichment.Ready
self.setStatusMessage("")
def __initialize_finish(self):
# Finalize the the widget's initialization (preferably after
# ensuring all required databases have been downloaded.
sets = geneset.list_all()
taxids = set(taxonomy.common_taxids() +
list(filter(None, [tid for _, tid, _ in sets])))
organisms = [(tid, name_or_none(tid)) for tid in taxids]
organisms = [(tid, name) for tid, name in organisms
if name is not None]
organisms = [(None, "None")] + sorted(organisms)
taxids = [tid for tid, _ in organisms]
names = [name for _, name in organisms]
self.taxid_list = taxids
self.speciesComboBox.clear()
self.speciesComboBox.addItems(names)
self.genesets = sets
if self.taxid in self.taxid_list:
taxid = self.taxid
else:
taxid = self.taxid_list[0]
self.taxid = None
self.setCurrentOrganism(taxid)
self.setBlocking(False)
self.__state = OWSetEnrichment.Ready
self.setStatusMessage("")
