def solve(self,scorer,initTrialPoint): """ This method applays the fitting algorithms to the problem. """ self.is_running = True self.scoreboard.init() self._setScorer(scorer) self.search_algorithm.setSolver(self) res = self.search_algorithm.setTrialPoint(initTrialPoint) if(not res): msg = "============ Solver class: method solve(...)==============" msg += os.linesep msg += "Cannot initialize the search algorithm" msg += os.linesep msg += "Stop." msg += os.linesep orbitFinalize(msg) while(not self.stopper.getShouldStop()): self.search_algorithm.makeStep() self.is_running = False self._setScorer(None)
def rebuild(self, Ekin=-1.0):
if (Ekin > 0.):
self.bunch.getSyncParticle().kinEnergy(Ekin)
for matrixNode in self.getNodes():
if (isinstance(matrixNode, BaseMATRIX) == True):
node = matrixNode.getParam("matrix_parent_node")
active_index = matrixNode.getParam(
"matrix_parent_node_active_index")
n_parts = matrixNode.getParam("matrix_parent_node_n_nodes")
if (n_parts != node.getnParts()):
msg = " orbit.teapot.TEAPOT_MATRIX_Lattice class" + os.linesep
msg = msg + " rebuild(Ekin = -1.0) method" + os.linesep
msg = msg + " TEAPOT node=" + node.getName() + os.linesep
msg = msg + " has been changed!" + os.linesep
msg = msg + " Stop!" + os.linesep
orbitFinalize(msg)
self.matrixGenerator.initBunch(self.bunch)
paramsDict = {}
paramsDict["bunch"] = self.bunch
paramsDict["node"] = node
node.setActivePartIndex(active_index)
node.track(paramsDict)
self.matrixGenerator.calculateMatrix(self.bunch,
matrixNode.getMatrix())
self.makeOneTurnMatrix()
def getNodeForName(self,name): """ Method. Returns the node with certain name. """ nodes = [] for node in self.__children: if(node.getName().find(name) == 0): nodes.append(node) if(len(nodes) == 1): return nodes[0] else: if(len(nodes) == 0): return None else: msg = "The AccLattice class. Method getNodeForName found many nodes instead of one!" msg = msg + os.linesep msg = msg + "looking for name=",name msg = msg + os.linesep msg = msg + "found nodes:" for node in nodes: msg = msg + " " + node.getName() msg = msg + os.linesep msg = "Please use getNodesForName method instead." msg = msg + os.linesep orbitFinalize(msg)
def filterSequences_and_OptionalCheck(self,accSeq_da_arr,names): """ This method will filter the sequences according to names list and check the order of sequences in names. All sequences should be in the right order. For SNS linac is just a linac. It returns the filtered array with data adapters with the names in the names array. """ seqencesLocal = accSeq_da_arr seqencesLocalNames = [] for seq_da in seqencesLocal: seqencesLocalNames.append(seq_da.getName()) ind_old = -1 count = 0 for name in names: ind = seqencesLocalNames.index(name) if(ind < 0 or (count > 0 and ind != (ind_old + 1))): msg = "The LinacLatticeFactory method getLinacAccLattice(names): sequence names array is wrong!" msg = msg + os.linesep msg = msg + "existing names=" + str(seqencesLocalNames) msg = msg + os.linesep msg = msg + "sequence names="+str(names) orbitFinalize(msg) ind_old = ind count += 1 ind_start = seqencesLocalNames.index(names[0]) accSeq_da_arr = accSeq_da_arr[ind_start:ind_start+len(names)] return accSeq_da_arr
def initialize(self):
"""
The Bend Combined Functions TEAPOT class implementation of
the AccNode class initialize() method.
"""
nParts = self.getnParts()
if (nParts < 2):
msg = "The Bend Combined Functions TEAPOT class instance should have more than 2 parts!"
msg = msg + os.linesep
msg = msg + "Method initialize():"
msg = msg + os.linesep
msg = msg + "Name of element=" + self.getName()
msg = msg + os.linesep
msg = msg + "Type of element=" + self.getType()
msg = msg + os.linesep
msg = msg + "nParts =" + str(nParts)
orbitFinalize(msg)
rho = self.getLength() / self.getParam("theta")
self.addParam("rho", rho)
lengthIN = (self.getLength() / (nParts - 1)) / 2.0
lengthOUT = (self.getLength() / (nParts - 1)) / 2.0
lengthStep = lengthIN + lengthOUT
self.setLength(lengthIN, 0)
self.setLength(lengthOUT, nParts - 1)
for i in xrange(nParts - 2):
self.setLength(lengthStep, i + 1)
def addChildNode(self,
node,
place,
part_index=0,
place_in_part=AccActionsContainer.BEFORE):
"""
Method. Adds a child node to the list defined by place and
(maybe) part index and place in the part (before or after).
The action of the child occurs after the action of the
parent at the entrance and before at the exit.
"""
nodes = None
if (place == AccNode.ENTRANCE or place == AccNode.EXIT):
nodes = self.__childNodesArr[place]
else:
if (place != AccNode.BODY):
msg = "The Class AccNode: error in method addChildNode(node,place,part_index,place_in_part)!"
msg = msg + os.linesep
msg = msg + "place parameter should be AccNode.ENTRANCE, AccNode.BODY, or AccNode.EXIT!"
msg = msg + os.linesep
msg = msg + "You specified place=" + place
msg = msg + os.linesep
msg = msg + "(part_index,place_in_part) =" + (part_index,
place_in_part)
msg = msg + os.linesep
msg = msg + "Fix it!"
msg = msg + os.linesep
orbitFinalize(msg)
nodes = self.__childNodesArr[place][part_index][place_in_part]
nodes.append(node)
def setGaussDistributedDisplacementParameter(self,
key,
value,
cut_off_level=3.0,
comm=mpi_comm.MPI_COMM_WORLD):
"""
Sets the random generated error value for a particular coordinate for all nodes.
The cooridinate is defined by key parameter.
"""
value = abs(value)
if (self.param_dict.has_key(key)):
self.param_dict[key] = value
else:
msg = "Class CoordinateDisplacementNodesModification - key-value problem"
msg = msg + os.linesep
msg = msg + "Method setGaussDistributedDisplacementParameter:"
msg = msg + os.linesep
msg = msg + "You are trying to set value for key=" + key
msg = msg + os.linesep
msg = msg + "Keys could be only = (dx, dxp, dy, dyp, dz, dE)"
msg = msg + os.linesep
orbitFinalize(msg)
return
#---------------------------------------------------------------------
for errCntrl in self.error_controllers:
value_tmp = random.gauss(0., value)
while (abs(value_tmp) > abs(value) * cut_off_level):
value_tmp = random.gauss(0., value)
main_rank = 0
value_tmp = orbit_mpi.MPI_Bcast(value_tmp, mpi_datatype.MPI_DOUBLE,
main_rank, comm)
errCntrl.setDisplacementParameter(key, value_tmp)
def updateErrorParameters(self):
"""
This is an implementation of parent class abstract method.
It updates the error defining parameters for all registered
error controllers.
"""
for errCntrl in self.error_controllers:
entr_parent_node = errCntrl.getEntanceNodeParent()
exit_parent_node = errCntrl.getExitNodeParent()
if (entr_parent_node != exit_parent_node):
msg = "Class StraightRotationY_NodesModification update parameters problem!"
msg = msg + os.linesep
msg = msg + "For this type of Error Node Controllers parent node is one, not two!"
msg = msg + os.linesep
msg = msg + "Entrance parent node=" + entr_parent_node.getName(
)
msg = msg + os.linesep
msg = msg + "Exit parent node=" + exit_parent_node.getName(
)
msg = msg + os.linesep
msg = msg + "Stop"
msg = msg + os.linesep
orbitFinalize(msg)
return
errCntrl.setRotationAngle(self.angle)
errCntrl.setBaseLength(entr_parent_node.getLength())
def getNodeForName(self,name): """ Method. Returns the node with certain name. """ nodes = [] for node in self.__children: if(node.getName().find(name) == 0): nodes.append(node) if(len(nodes) == 1): return nodes[0] else: if(len(nodes) == 0): return None else: msg = "The AccLattice class. Method getNodeForName found many nodes instead of one!" msg = msg + os.linesep msg = msg + "looking for name="+name msg = msg + os.linesep msg = msg + "found nodes:" for node in nodes: msg = msg + " " + node.getName() msg = msg + os.linesep msg = msg + "Please use getNodesForName method instead." msg = msg + os.linesep orbitFinalize(msg)
def initialize(self):
"""
The Bend Combined Functions TEAPOT class implementation of
the AccNode class initialize() method.
"""
nParts = self.getnParts()
if(nParts < 2):
msg = "The Bend Combined Functions TEAPOT class instance should have more than 2 parts!"
msg = msg + os.linesep
msg = msg + "Method initialize():"
msg = msg + os.linesep
msg = msg + "Name of element=" + self.getName()
msg = msg + os.linesep
msg = msg + "Type of element=" + self.getType()
msg = msg + os.linesep
msg = msg + "nParts =" + str(nParts)
orbitFinalize(msg)
rho = self.getLength()/self.getParam("theta")
self.addParam("rho",rho)
lengthIN = (self.getLength()/(nParts - 1))/2.0
lengthOUT = (self.getLength()/(nParts - 1))/2.0
lengthStep = lengthIN + lengthOUT
self.setLength(lengthIN,0)
self.setLength(lengthOUT,nParts - 1)
for i in xrange(nParts-2):
self.setLength(lengthStep,i+1)
def _setPartsLengthEvenly(self, n=1):
"""
Method. Sets lengths of all parts evenly.
"""
self.__nParts = n
n_body_children = self.getNumberOfBodyChildren()
if (n_body_children != 0):
msg = "The Class AccNode: method _setPartsLengthEvenly will remove the exiting child nodes!"
msg = msg + os.linesep
msg = "You will empty self.__childNodesArr[AccNode.BODY] array which is not empty!"
msg = msg + os.linesep
msg = msg + "Name of element=" + self.getName()
msg = msg + os.linesep
msg = msg + "Type of element=" + self.getType()
msg = msg + os.linesep
msg = msg + "Requested nParts =" + str(n)
msg = msg + os.linesep
msg = msg + "N body children=" + n_body_children
msg = msg + os.linesep
orbitFinalize(msg)
self.__lengthArr = []
self.__childNodesArr[AccNode.BODY] = []
for i in range(self.__nParts):
self.__lengthArr.append(self.__length / self.__nParts)
self.__childNodesArr[AccNode.BODY].append([[], []])
def initialize(self):
"""
The Quad Combined Function class implementation
of the AccNode class initialize() method.
The parts number should be even to have ability to put correctors
at the center of the quad.
"""
nParts = self.getnParts()
if (nParts < 2 and nParts % 2 != 0):
msg = "The Quad Combined Function class instance should have no less than 2 and even number of parts!"
msg = msg + os.linesep
msg = "Even number of parts are needed for the correctors at the center of the quad."
msg = msg + os.linesep
msg = msg + "Method initialize():"
msg = msg + os.linesep
msg = msg + "Name of element=" + self.getName()
msg = msg + os.linesep
msg = msg + "Type of element=" + self.getType()
msg = msg + os.linesep
msg = msg + "nParts =" + str(nParts)
orbitFinalize(msg)
lengthStep = self.getLength() / nParts
for i in range(nParts):
self.setLength(lengthStep, i)
"""
def ttf_track_bunch__(self,bunch,frequency,E0L,phase):
"""
Tracks the bunch through the TTF thin gap model. This private method was
introduced to to check the beta TTF limits in the polynomial representation
of T,T',S,and S' functions of the relativistic beta.
"""
beta = bunch.getSyncParticle().beta()
beta_min = self.getParam("beta_min")
beta_max = self.getParam("beta_max")
if(beta < beta_min or beta > beta_max):
sequence = self.getSequence()
accLattice = sequence.getLinacAccLattice()
rfCavity = self.getRF_Cavity()
msg = "The Python BaseRF_Gap class. The beta for SyncPart is not in the range [min:max]!"
msg = msg + os.linesep
if(accLattice != None):
msg = msg + "Lattice =" + accLattice.getName()
msg = msg + os.linesep
if(sequence != None):
msg = msg + "Sequence =" + sequence.getName()
msg = msg + os.linesep
msg = msg + "RF Cavity =" + rfCavity.getName()
msg = msg + os.linesep
msg = msg + "Name of element=" + self.getName()
msg = msg + os.linesep
msg = msg + "Type of element=" + self.getType()
msg = msg + os.linesep
msg = msg + "beta=" + str(beta)
msg = msg + os.linesep
msg = msg + "beta min=" + str(beta_min)
msg = msg + os.linesep
msg = msg + "beta max=" + str(beta_max)
msg = msg + os.linesep
orbitFinalize(msg)
self.cppGapModel.trackBunch(bunch,frequency,E0L,phase,self.polyT,self.polyS,self.polyTp,self.polySp)
def GetEngeFunction(quad):
"""
This is an example of a EngeFunctionFactory function.
It returns the EngeFunction function for the instance of Quad node.
The quad should have the aperture parameter.
It is used in the quad+rf lattice transformation by default.
User can prepare his/her own EngeFunctionFactory function.
"""
length_param = quad.getLength()
if (quad.hasParam("aperture")):
acceptance_diameter_param = quad.getParam("aperture")
cutoff_level = 0.001
func = EngeFunction(length_param, acceptance_diameter_param,
cutoff_level)
return func
else:
msg = "Inside the Replace_BaseRF_Gap_and_Quads_to_Overlapping_Nodes Python function. "
msg += os.linesep
msg += "Cannot create the EngeFunction for the quad!"
msg += os.linesep
msg = msg + "quad name = " + quad.getName()
msg = msg + os.linesep
msg = msg + "It does not have the aperture parameter!"
msg = msg + os.linesep
orbitFinalize(msg)
return None
def ttf_track_bunch__(self,bunch,frequency,E0L,phase):
"""
Tracks the bunch through the TTF thin gap model.
"""
beta = bunch.getSyncParticle().beta()
beta_min = self.getParam("beta_min")
beta_max = self.getParam("beta_max")
if(beta < beta_min or beta > beta_max):
sequence = self.getSequence()
accLattice = sequence.getLinacAccLattice()
rfCavity = self.getRF_Cavity()
msg = "The Python BaseRF_Gap class. The beta for SyncPart is not in the range [min:max]!"
msg = msg + os.linesep
if(accLattice != None):
msg = msg + "Lattice =" + accLattice.getName()
msg = msg + os.linesep
if(sequence != None):
msg = msg + "Sequence =" + sequence.getName()
msg = msg + os.linesep
msg = msg + "RF Cavity =" + rfCavity.getName()
msg = msg + os.linesep
msg = msg + "Name of element=" + self.getName()
msg = msg + os.linesep
msg = msg + "Type of element=" + self.getType()
msg = msg + os.linesep
msg = msg + "beta=" + str(beta)
msg = msg + os.linesep
msg = msg + "beta min=" + str(beta_min)
msg = msg + os.linesep
msg = msg + "beta max=" + str(beta_max)
msg = msg + os.linesep
orbitFinalize(msg)
self.cppGapModel.trackBunch(bunch,frequency,E0L,phase,self.polyT,self.polyS,self.polyTp,self.polySp)
def track(self, paramsDict):
"""
It is tracking the bunch through this node.
"""
bunch = paramsDict["bunch"]
nParts = bunch.getSize()
if (nParts < 1):
msg = "TransverseBPM class:"
msg = msg + os.linesep
msg = msg + "Node name=" + self.getName()
msg = msg + os.linesep
msg = msg + "Number of macro-particles in bunch nParts=" + str(
nParts)
msg = msg + os.linesep
msg = msg + "It should be more than 0"
msg = msg + os.linesep
msg = msg + "Stop."
msg = msg + os.linesep
orbitFinalize(msg)
elif (nParts > 1):
bunch = self.trajCorrection.makeOneParticleBunch(bunch)
self.x = bunch.x(0)
self.y = bunch.y(0)
self.xp = bunch.xp(0)
self.yp = bunch.yp(0)
def addNode(self, node):
if (not isinstance(node, LinacStuctureNode)):
msg = "LinacStructureSeq: cannot add node. It is not LinacStuctureNode instance!"
msg = msg + os.linesep
msg = msg + "========================================="
msg = msg + os.linesep
orbitFinalize(msg)
self.nodes.append(node)
def addNode(self,node): if(not isinstance(node,LinacStuctureNode)): msg = "LinacStructureSeq: cannot add node. It is not LinacStuctureNode instance!" msg = msg + os.linesep msg = msg + "=========================================" msg = msg + os.linesep orbitFinalize(msg) self.nodes.append(node)
def track(self, paramsDict):
"""
The simplest RF gap class implementation of
the AccNode class track(probe) method.
"""
bunch = paramsDict["bunch"]
syncPart = bunch.getSyncParticle()
E0TL = self.getParam("E0TL")
E0L = self.getParam("E0L")
modePhase = self.getParam("mode") * math.pi
rfCavity = self.getRF_Cavity()
frequency = rfCavity.getFrequency()
phase = rfCavity.getPhase() + modePhase
rf_ampl = rfCavity.getAmp()
arrival_time = syncPart.time()
designArrivalTime = rfCavity.getDesignArrivalTime()
if (self.__isFirstGap):
if (rfCavity.isDesignSetUp()):
#print "debug RF =",self.getName()," phase=",(phase*180./math.pi - 180.)
phase = math.fmod(
frequency *
(arrival_time - designArrivalTime) * 2.0 * math.pi + phase,
2.0 * math.pi)
#print "debug RF =",self.getName()," phase=",(phase*180./math.pi - 180.)
else:
sequence = self.getSequence()
accLattice = sequence.getLinacAccLattice()
msg = "The BaseRF_Gap class. You have to run trackDesign on the LinacAccLattice first to initialize all RF Cavities' phases!"
msg = msg + os.linesep
if (accLattice != None):
msg = msg + "Lattice =" + accLattice.getName()
msg = msg + os.linesep
if (sequence != None):
msg = msg + "Sequence =" + sequence.getName()
msg = msg + os.linesep
msg = msg + "RF Cavity =" + rfCavity.getName()
msg = msg + os.linesep
msg = msg + "Name of element=" + self.getName()
msg = msg + os.linesep
msg = msg + "Type of element=" + self.getType()
msg = msg + os.linesep
orbitFinalize(msg)
else:
phase = math.fmod(
frequency *
(arrival_time - designArrivalTime) * 2.0 * math.pi + phase,
2.0 * math.pi)
#---- rf gap input phase -----
self.setGapPhase(phase)
#call rf gap model to track the bunch
if (rf_ampl == 0.): return
if (isinstance(self.cppGapModel, MatrixRfGap)
or isinstance(self.cppGapModel, BaseRfGap)
or isinstance(self.cppGapModel, BaseRfGap_slow)):
self.cppGapModel.trackBunch(bunch, frequency, E0TL * rf_ampl,
phase)
else:
self.ttf_track_bunch__(bunch, frequency, E0L * rf_ampl, phase)
def track(self, paramsDict):
"""
The simplest RF gap class implementation of
the AccNode class track(probe) method.
"""
index = self.getActivePartIndex()
length = self.getLength(index)
bunch = paramsDict["bunch"]
syncPart = bunch.getSyncParticle()
if (index == 0 or index == 2):
gapOffset = 0.
if (self.hasParam("gapOffset")):
gapOffset = self.getParam("gapOffset")
if (index == 2): gapOffset = -gapOffset
TPB.drift(bunch, length + gapOffset)
return
E0TL = self.getParam("E0TL")
modePhase = self.getParam("modePhase") * math.pi
rfCavity = self.getRF_Cavity()
frequency = rfCavity.getFrequency()
rfPhase = rfCavity.getPhase() + modePhase
rf_ampl = rfCavity.getAmp()
phase = rfPhase
arrival_time = syncPart.time()
designArrivalTime = rfCavity.getDesignArrivalTime()
if (self.__isFirstGap):
if (rfCavity.isDesignSetUp()):
#print "debug RF =",self.getName()," phase=",(phase*180./math.pi - 180.)
phase = math.fmod(
frequency *
(arrival_time - designArrivalTime) * 2.0 * math.pi +
rfPhase, 2.0 * math.pi)
#print "debug RF =",self.getName()," phase=",(phase*180./math.pi - 180.)
else:
sequence = self.getSequence()
accLattice = sequence.getLinacAccLattice()
msg = "The BaseRF_Gap class. You have to run trackDesign on the LinacAccLattice first to initialize all RF Cavities' phases!"
msg = msg + os.linesep
msg = msg + "Lattice =" + accLattice.getName()
msg = msg + os.linesep
msg = msg + "Sequence =" + sequence.getName()
msg = msg + os.linesep
msg = msg + "RF Cavity =" + rfCavity.getName()
msg = msg + os.linesep
msg = msg + "Name of element=" + self.getName()
msg = msg + os.linesep
msg = msg + "Type of element=" + self.getType()
msg = msg + os.linesep
orbitFinalize(msg)
else:
phase = math.fmod(
frequency *
(arrival_time - designArrivalTime) * 2.0 * math.pi + rfPhase,
2.0 * math.pi)
#------------------------------------------------------
#call rf gap with E0TL phase phase of the gap and a longitudinal shift parameter
self.cppGapModel.trackBunch(bunch, frequency, E0TL, phase)
self.setGapPhase(phase)
def addTeapotApertureNode(lattice, position, Aperture_node):
"""
It will put one Teapot Aperture node in the lattice
"""
length_tolerance = 0.0001
lattice.initialize()
if (position > lattice.getLength()):
position = lattice.getLength()
print "User-specified aperture position is larger than lattice length. Resetting it to lattice length."
Aperture_node.setPosition(position)
position_start = position
position_stop = position + Aperture_node.getLength()
(node_start_ind, node_stop_ind, z, ind) = (-1, -1, 0., 0)
for node in lattice.getNodes():
if (position_start >= z and position_start <= z + node.getLength()):
node_start_ind = ind
if (position_stop >= z and position_stop <= z + node.getLength()):
node_stop_ind = ind
ind += 1
z += node.getLength()
#-------now we check that between start and end we have only non-modified drift elements
#-------if the space charge was added first - that is a problem. The collimation should be added first.
for node in lattice.getNodes()[node_start_ind:node_stop_ind + 1]:
#print "debug node=",node.getName()," type=",node.getType()," L=",node.getLength()
if (not isinstance(node, DriftTEAPOT)):
print "Non-drift node=", node.getName(), " type=", node.getType(
), " L=", node.getLength()
orbitFinalize(
"We have non-drift element at the place of the Aperture node! Stop!"
)
#if(node.getNumberOfChildren() != 4):
#print "Node=",node.getName()," type=",node.getType()," L=",node.getLength()," N children nodes=",node.getNumberOfChildren()
#orbitFinalize("Drift element was modified with additional functionality (SC or something else)! Add collimation first! Stop!")
# make array of nodes from Aperture node in the center and possible two drifts if their length is more than length_tollerance [m]
nodes_new_arr = [
Aperture_node,
]
drift_node_start = lattice.getNodes()[node_start_ind]
drift_node_stop = lattice.getNodes()[node_stop_ind]
#------now we will create two drift nodes: before the Aperture node and after
#------if the length of one of these additional drifts less than length_tollerance [m] we skip this drift
if (position_start > lattice.getNodePositionsDict()[drift_node_start][0] +
length_tolerance):
drift_node_start_new = DriftTEAPOT(drift_node_start.getName())
drift_node_start_new.setLength(
position_start -
lattice.getNodePositionsDict()[drift_node_start][0])
nodes_new_arr.insert(0, drift_node_start_new)
if (position_stop < lattice.getNodePositionsDict()[drift_node_stop][1] -
length_tolerance):
drift_node_stop_new = DriftTEAPOT(drift_node_stop.getName())
drift_node_stop_new.setLength(
lattice.getNodePositionsDict()[drift_node_stop][1] - position_stop)
nodes_new_arr.append(drift_node_stop_new)
#------ now we will modify the lattice by replacing the found part with the new nodes
lattice.getNodes()[node_start_ind:node_stop_ind + 1] = nodes_new_arr
# initialize the lattice
lattice.initialize()
def __init__(self, teapot_lattice, bunch, name=None):
MATRIX_Lattice.__init__(self, name)
if (isinstance(teapot_lattice, TEAPOT_Lattice) != True):
orbitFinalize(
"Constructor orbit.teapot.TEAPOT_MATRIX_Lattice needs the TEAPOT_Lattice instance."
)
#memorize the TEAPOT LATTICE
if (name == None):
name = teapot_lattice.getName()
self.setName(name)
self.teapot_lattice = teapot_lattice
self.bunch = Bunch()
self.lost_bunch = Bunch()
bunch.copyEmptyBunchTo(self.bunch)
bunch.copyEmptyBunchTo(self.lost_bunch)
self.matrixGenerator = MatrixGenerator()
#----------make MATRIX lattice from TEAPOT
def twissAction(paramsDict):
node = paramsDict["node"]
bunch = paramsDict["bunch"]
active_index = node.getActivePartIndex()
n_parts = node.getnParts()
length = node.getLength(active_index)
if (isinstance(node, BaseTEAPOT) == True
and isinstance(node, RingRFTEAPOT) == False):
self.matrixGenerator.initBunch(bunch)
node.track(paramsDict)
#bunch is ready
matrixNode = BaseMATRIX(node.getName() + "_" +
str(active_index))
matrixNode.addParam("matrix_parent_node", node)
matrixNode.addParam("matrix_parent_node_type", node.getType())
matrixNode.addParam("matrix_parent_node_n_nodes", n_parts)
matrixNode.addParam("matrix_parent_node_active_index",
active_index)
matrixNode.setLength(length)
self.matrixGenerator.calculateMatrix(bunch,
matrixNode.getMatrix())
#print "============= name=",matrixNode.getName(),
#print " type=",matrixNode.getParam("matrix_parent_node_type"),
#print " L=",matrixNode.getLength()
self.addNode(matrixNode)
if (isinstance(node, RingRFTEAPOT) == True):
rf_node = RingRFTEAPOT(node.getName())
rf_node.setParamsDict(node.getParamsDict().copy())
self.addNode(rf_node)
accContainer = AccActionsContainer()
accContainer.addAction(twissAction, AccActionsContainer.BODY)
paramsDict = {}
paramsDict["bunch"] = self.bunch
paramsDict["lostbunch"] = self.lost_bunch
paramsDict["position"] = 0.
paramsDict["useCharge"] = self.teapot_lattice.getUseRealCharge()
self.teapot_lattice.trackActions(accContainer, paramsDict)
self.makeOneTurnMatrix()
self.initialize()
def addSeq(self, node):
if (not isinstance(node, LinacStructureSeq)):
msg = "LinacStructureTree: cannot add node. It is not LinacStructureSeq instance!"
msg = msg + os.linesep
msg = msg + "========================================="
msg = msg + os.linesep
orbitFinalize(msg)
self.seqs.append(node)
self.length = self.length + node.getParam("length")
def addSeq(self,node):
if(not isinstance(node,LinacStructureSeq)):
msg = "LinacStructureTree: cannot add node. It is not LinacStructureSeq instance!"
msg = msg + os.linesep
msg = msg + "========================================="
msg = msg + os.linesep
orbitFinalize(msg)
self.seqs.append(node)
self.length = self.length + node.getParam("length")
def addRFNode(lattice, position, rf_node):
"""
This will put one rf cavity node in the lattice
"""
length_tolerance = 0.0001
lattice.initialize()
position_start = position
position_stop = position + rf_node.getLength()
(node_start_ind, node_stop_ind, z, ind) = (-1, -1, 0., 0)
for node in lattice.getNodes():
if(position_start >= z and\
position_start <= z + node.getLength()):
node_start_ind = ind
if(position_stop >= z and\
position_stop <= z + node.getLength()):
node_stop_ind = ind
ind += 1
z += node.getLength()
#-------Now we check that between start and end
#-------we have only non-modified drift elements
#-------If the rf was added first - that is a problem.
#-------The collimation should be added first.
for node in lattice.getNodes()[node_start_ind:node_stop_ind + 1]:
#print "debug node = ", node.getName(),\
#" type = ", node.getType()," L = ", node.getLength()
if (not isinstance(node, DriftTEAPOT)):
print "Non-drift node = ", node.getName(),\
" type = ", node.getType()," L = ", node.getLength()
orbitFinalize("We have a non-drift element at the\
location of the rf node! Stop!")
# Make array of nodes from rf node in the center and possibly
# two drifts if their length is more than length_tollerance [m]
nodes_new_arr = [
rf_node,
]
drift_node_start = lattice.getNodes()[node_start_ind]
drift_node_stop = lattice.getNodes()[node_stop_ind]
#-------Now we create two drift nodes surrounding the rf node.
#-------If the length of one of these additional drifts is
#-------less than length_tollerance [m] we skip this drift
if(position_start > lattice.getNodePositionsDict()\
[drift_node_start][0] + length_tolerance):
drift_node_start_new = DriftTEAPOT(drift_node_start.getName())
drift_node_start_new.setLength(position_start\
- lattice.getNodePositionsDict()[drift_node_start][0])
nodes_new_arr.insert(0, drift_node_start_new)
if(position_stop < lattice.getNodePositionsDict()\
[drift_node_stop][1] - length_tolerance):
drift_node_stop_new = DriftTEAPOT(drift_node_stop.getName())
drift_node_stop_new.setLength(lattice.getNodePositionsDict\
()[drift_node_stop][1] - position_stop)
nodes_new_arr.append(drift_node_stop_new)
#-------Now modify the lattice by replacing the chosen part
#-------by the new nodes
lattice.getNodes()[node_start_ind:node_stop_ind + 1] = nodes_new_arr
# initialize the lattice
lattice.initialize()
def __init__(self, xml_file_name):
self.dom_doc = xml.dom.minidom.parse(xml_file_name)
if (len(self.dom_doc.childNodes) != 1):
msg = "SimplifiedLinacParser: input xml file has a wrong structure!"
msg = msg + os.linesep
msg = msg + "File: " + xml_file_name
msg = msg + os.linesep
msg = msg + "========================================="
msg = msg + os.linesep
orbitFinalize(msg)
self.domLinac = self.dom_doc.childNodes[0]
self.linacTree = LinacStructureTree(name=self.domLinac.localName)
domSequences = self._stripDOMtoElements(self.domLinac)
for domSeq in domSequences:
linacSeq = LinacStructureSeq(name=domSeq.localName)
#print "debug name=",domSeq.localName
seqParamDict = {}
for i in range(domSeq.attributes.length):
seqParamDict[domSeq.attributes.item(
i).name] = domSeq.attributes.item(i).value
self._transformDict(seqParamDict)
linacSeq.setLength(seqParamDict["length"])
linacSeq.setParam("rfFrequency", seqParamDict["rfFrequency"])
linacSeq.setParam("bpmFrequency", seqParamDict["bpmFrequency"])
domNodes = self._stripDOMtoElements(domSeq)
for domNode in domNodes:
nNodeParam = domNode.attributes.length
paramDict = {}
for i in range(nNodeParam):
paramDict[domNode.attributes.item(
i).name] = domNode.attributes.item(i).value
#print "i=",i," name=",domNode.attributes.item(i).name," val=",domNode.attributes.item(i).value
#---- add parameters from <parameters> child domNode
domParameters = self._stripDOMtoElements(domNode)
#print "domNode =",domNode.localName ," domParameters=",domParameters
if (len(domParameters) > 1):
msg = "SimplifiedLinacParser:more than 1 child in accNode!"
msg = msg + os.linesep
orbitFinalize(msg)
if (len(domParameters) == 1):
domParameter = domParameters[0]
for i in range(domParameter.attributes.length):
paramDict[domParameter.attributes.item(
i).name] = domParameter.attributes.item(i).value
nodeName = paramDict["name"]
#the name is not in the dictionary of parameters
del paramDict["name"]
linacNode = LinacStuctureNode(name=nodeName)
linacNode.setType(type_in=paramDict["type"])
#the type is not in the dictionary of parameters
del paramDict["type"]
self._transformDict(paramDict)
linacNode.setParamsDict(paramDict)
linacSeq.addNode(linacNode)
self.linacTree.addSeq(linacSeq)
def addRF_Cavity(self, cav):
if (isinstance(cav, RF_Cavity) == True):
self.__rfCavities.append(cav)
else:
msg = "The LinacAccLattice, method addRF_Cavity(cav)!"
msg = msg + os.linesep
msg = msg + "cav is not a subclass of RF_Cavity."
msg = msg + os.linesep
msg = msg + "Stop."
msg = msg + os.linesep
orbitFinalize(msg)
def addRF_Cavity(self,cav): if(isinstance(cav, RF_Cavity) == True): self.__rfCavities.append(cav) else: msg = "The LinacAccLattice, method addRF_Cavity(cav)!" msg = msg + os.linesep msg = msg + "cav is not a subclass of RF_Cavity." msg = msg + os.linesep msg = msg + "Stop." msg = msg + os.linesep orbitFinalize(msg)
def addTeapotDiagnosticsNode(lattice, position, diagnostics_node):
"""
It will put one Teapot diagnostics node in the lattice
"""
length_tollerance = 0.0001
lattice.initialize()
position_start = position
position_stop = position + diagnostics_node.getLength()
diagnostics_node.setPosition(position)
diagnostics_node.setLatticeLength(lattice.getLength())
(node_start_ind, node_stop_ind, z, ind) = (-1, -1, 0., 0)
for node in lattice.getNodes():
if (position_start >= z and position_start <= z + node.getLength()):
node_start_ind = ind
if (position_stop >= z and position_stop <= z + node.getLength()):
node_stop_ind = ind
ind += 1
z += node.getLength()
#-------now we check that between start and end we have only non-modified drift elements
#-------if the space charge was added first - that is a problem. The collimation should be added first.
for node in lattice.getNodes()[node_start_ind:node_stop_ind + 1]:
#print "debug node=",node.getName()," type=",node.getType()," L=",node.getLength()
if (not isinstance(node, DriftTEAPOT)):
print "Non-drift node=", node.getName(), " type=", node.getType(
), " L=", node.getLength()
orbitFinalize(
"We have non-drift element at the place of the diagnostics! Stop!"
)
# make array of nodes from diagnostics in the center and possible two drifts if their length is more than length_tollerance [m]
nodes_new_arr = [
diagnostics_node,
]
drift_node_start = lattice.getNodes()[node_start_ind]
drift_node_stop = lattice.getNodes()[node_stop_ind]
#------now we will create two drift nodes: before the diagnostics and after
#------if the length of one of these additional drifts less than length_tollerance [m] we skip this drift
if (position_start > lattice.getNodePositionsDict()[drift_node_start][0] +
length_tollerance):
drift_node_start_new = DriftTEAPOT(drift_node_start.getName())
drift_node_start_new.setLength(
position_start -
lattice.getNodePositionsDict()[drift_node_start][0])
nodes_new_arr.insert(0, drift_node_start_new)
if (position_stop < lattice.getNodePositionsDict()[drift_node_stop][1] -
length_tollerance):
drift_node_stop_new = DriftTEAPOT(drift_node_stop.getName())
drift_node_stop_new.setLength(
lattice.getNodePositionsDict()[drift_node_stop][1] - position_stop)
nodes_new_arr.append(drift_node_stop_new)
#------ now we will modify the lattice by replacing the found part with the new nodes
lattice.getNodes()[node_start_ind:node_stop_ind + 1] = nodes_new_arr
# initialize the lattice
lattice.initialize()
def addSequence(self,seq): if(isinstance(seq, Sequence) == True): self.__sequences.append(seq) else: msg = "The LinacAccLattice, method addSequence(seq)!" msg = msg + os.linesep msg = msg + "seq is not a subclass of Sequence." msg = msg + os.linesep msg = msg + "Stop." msg = msg + os.linesep orbitFinalize(msg)
def addSequence(self, seq):
if (isinstance(seq, Sequence) == True):
self.__sequences.append(seq)
else:
msg = "The LinacAccLattice, method addSequence(seq)!"
msg = msg + os.linesep
msg = msg + "seq is not a subclass of Sequence."
msg = msg + os.linesep
msg = msg + "Stop."
msg = msg + os.linesep
orbitFinalize(msg)
def __init__(self, ltree):
if (isinstance(ltree, LinacStructureTree) != True):
msg = "The LinacLatticeFactory constructor: you have to specify the LinacStructureTree instance as input!"
msg = msg + os.linesep
msg = msg + "Stop."
msg = msg + os.linesep
orbitFinalize(msg)
self.ltree = ltree
#We need to compare positions, lengths etc. This is our delta
self.zeroDistance = 0.00001
#The maximal length of the drift. It will be devided if it is more than that.
self.maxDriftLength = 1.
def addRF_Cavity(self, cav):
""" Adds the RF cavity to the list inside this sequence. """
if (isinstance(cav, RF_Cavity) == True):
self.__rfCavities.append(cav)
else:
msg = "The Sequence class , method addRF_Cavity(cav)!"
msg = msg + os.linesep
msg = msg + "cav is not a subclass of RF_Cavity."
msg = msg + os.linesep
msg = msg + "Stop."
msg = msg + os.linesep
orbitFinalize(msg)
def setZ_Step(self,z_step): if(self.axis_field_func == None): msg = "Class AxisFieldRF_Gap: You have to get the axis field from a file first!" msg = msg + os.linesep msg = "Call readAxisFieldFile(dir_location,file_name) method first!" orbitFinalize(msg) length = self.getLength() nParts = int(length*1.0000001/z_step) if(nParts < 1): nParts = 1 self.z_step = length/nParts #---- this will set the even distribution of the lengths between parts self.setnParts(nParts)
def __init__(self,xml_file_name):
self.dom_doc = xml.dom.minidom.parse(xml_file_name)
if(len(self.dom_doc.childNodes) != 1):
msg = "SimplifiedLinacParser: input xml file has a wrong structure!"
msg = msg + os.linesep
msg = msg + "File: " + xml_file_name
msg = msg + os.linesep
msg = msg + "========================================="
msg = msg + os.linesep
orbitFinalize(msg)
self.domLinac = self.dom_doc.childNodes[0]
self.linacTree = LinacStructureTree(name = self.domLinac.localName)
domSequences = self._stripDOMtoElements(self.domLinac)
for domSeq in domSequences:
linacSeq = LinacStructureSeq(name = domSeq.localName)
#print "debug name=",domSeq.localName
seqParamDict = {}
for i in range(domSeq.attributes.length):
seqParamDict[domSeq.attributes.item(i).name] = domSeq.attributes.item(i).value
self._transformDict(seqParamDict)
linacSeq.setLength(seqParamDict["length"])
linacSeq.setParam("rfFrequency",seqParamDict["rfFrequency"])
linacSeq.setParam("bpmFrequency",seqParamDict["bpmFrequency"])
domNodes = self._stripDOMtoElements(domSeq)
for domNode in domNodes:
nNodeParam = domNode.attributes.length
paramDict = {}
for i in range(nNodeParam):
paramDict[domNode.attributes.item(i).name] = domNode.attributes.item(i).value
#print "i=",i," name=",domNode.attributes.item(i).name," val=",domNode.attributes.item(i).value
#---- add parameters from <parameters> child domNode
domParameters = self._stripDOMtoElements(domNode)
#print "domNode =",domNode.localName ," domParameters=",domParameters
if(len(domParameters) > 1):
msg = "SimplifiedLinacParser:more than 1 child in accNode!"
msg = msg + os.linesep
orbitFinalize(msg)
if(len(domParameters) == 1):
domParameter = domParameters[0]
for i in range(domParameter.attributes.length):
paramDict[domParameter.attributes.item(i).name] = domParameter.attributes.item(i).value
nodeName = paramDict["name"]
#the name is not in the dictionary of parameters
del paramDict["name"]
linacNode = LinacStuctureNode(name = nodeName)
linacNode.setType(type_in = paramDict["type"])
#the type is not in the dictionary of parameters
del paramDict["type"]
self._transformDict(paramDict)
linacNode.setParamsDict(paramDict)
linacSeq.addNode(linacNode)
self.linacTree.addSeq(linacSeq)
def getLinacAccLattice(self,names,xml_file_name): """ Returns the linac accelerator lattice for specified sequence names and for a specified XML file. """ if(len(names) < 1): msg = "The SNS_LinacLatticeFactory method getLinacAccLattice(names,xml_file_name): you have to specify the names array!" msg = msg + os.linesep msg = msg + "Stop." msg = msg + os.linesep orbitFinalize(msg) #----- let's parse the XML file acc_da = XmlDataAdaptor.adaptorForFile(xml_file_name) return self.getLinacAccLatticeFromDA(names,acc_da)
def getLinacAccLattice(self,names,xml_file_name): """ Returns the linac accelerator lattice for specified sequence names and for a specified XML file. """ if(len(names) < 1): msg = "The SNS_LinacLatticeFactory method getLinacAccLattice(names,xml_file_name): you have to specify the names array!" msg = msg + os.linesep msg = msg + "Stop." msg = msg + os.linesep orbitFinalize(msg) #----- let's parse the XML file acc_da = XmlDataAdaptor.adaptorForFile(xml_file_name) return self.getLinacAccLatticeFromDA(names,acc_da)
def Get_quads_zeroLengthNodes_in_range(accSeq, node_ind_start, node_ind_end):
"""
Returns all quads and zero-length nodes in this index range.
It also checks that all elements inside this range has zero length or they
are drifts of quads.
"""
nodes = accSeq.getNodes()
zero_length_nodes = []
child_nodes = []
quads = []
for node_ind in range(node_ind_start, node_ind_end + 1):
node = nodes[node_ind]
children_arr = node.getBodyChildren()
if (len(children_arr) > 0):
#print "debug ========= parent node=",node.getName()," pos = ",node.getPosition()
for child in children_arr:
if (child.getLength() == 0.):
child_nodes.append(child)
#print " debug child=",child.getName()," pos=",child.getPosition()
if (not isinstance(node, BaseRF_Gap)):
length = node.getLength()
if (length == 0.):
zero_length_nodes.append(node)
else:
if (isinstance(node, Quad)):
quads.append(node)
else:
if (not isinstance(node, Drift)):
msg = "The Replace_BaseRF_Gap_and_Quads_to_Overlapping_Nodes function. "
msg += "This Acc. Sequence has an element that "
msg += os.linesep
msg += "1. has non-zero length"
msg += os.linesep
msg += "2. not a quad"
msg += os.linesep
msg += "3. not a drift"
msg += os.linesep
msg += "This function does not know how to handle this elelement!"
msg += os.linesep
msg = msg + "Acc Sequence =" + accSeq.getName()
msg = msg + os.linesep
msg = msg + "Acc element =" + node.getName()
msg = msg + os.linesep
msg = msg + "Acc element type =" + node.getType()
msg = msg + os.linesep
orbitFinalize(msg)
zero_length_nodes += child_nodes
zero_length_nodes = sorted(zero_length_nodes,
key=lambda x: x.getPosition(),
reverse=False)
return (quads, zero_length_nodes)
def track(self, paramsDict):
"""
The simplest RF gap class implementation of
the AccNode class track(probe) method.
"""
index = self.getActivePartIndex()
length = self.getLength(index)
bunch = paramsDict["bunch"]
syncPart = bunch.getSyncParticle()
if(index == 0 or index == 2):
gapOffset = 0.
if(self.hasParam("gapOffset")): gapOffset = self.getParam("gapOffset")
if(index == 2): gapOffset = -gapOffset
TPB.drift(bunch, length + gapOffset)
return
E0TL = self.getParam("E0TL")
modePhase = self.getParam("modePhase")*math.pi
rfCavity = self.getRF_Cavity()
frequency = rfCavity.getFrequency()
rfPhase = rfCavity.getPhase() + modePhase
rf_ampl = rfCavity.getAmp()
phase = rfPhase
arrival_time = syncPart.time()
designArrivalTime = rfCavity.getDesignArrivalTime()
if(self.__isFirstGap):
if(rfCavity.isDesignSetUp()):
#print "debug RF =",self.getName()," phase=",(phase*180./math.pi - 180.)
phase = math.fmod(frequency*(arrival_time - designArrivalTime)*2.0*math.pi + rfPhase,2.0*math.pi)
#print "debug RF =",self.getName()," phase=",(phase*180./math.pi - 180.)
else:
sequence = self.getSequence()
accLattice = sequence.getLinacAccLattice()
msg = "The BaseRF_Gap class. You have to run trackDesign on the LinacAccLattice first to initialize all RF Cavities' phases!"
msg = msg + os.linesep
msg = msg + "Lattice =" + accLattice.getName()
msg = msg + os.linesep
msg = msg + "Sequence =" + sequence.getName()
msg = msg + os.linesep
msg = msg + "RF Cavity =" + rfCavity.getName()
msg = msg + os.linesep
msg = msg + "Name of element=" + self.getName()
msg = msg + os.linesep
msg = msg + "Type of element=" + self.getType()
msg = msg + os.linesep
orbitFinalize(msg)
else:
phase = math.fmod(frequency*(arrival_time - designArrivalTime)*2.0*math.pi+rfPhase,2.0*math.pi)
#------------------------------------------------------
#call rf gap with E0TL phase phase of the gap and a longitudinal shift parameter
self.cppGapModel.trackBunch(bunch,frequency,E0TL,phase)
self.setGapPhase(phase)
def AddBendDisplacementError(self):
"""
Adds a BendDisplacementError to nodes
between nodeIndexi and nodeIndexf.
"""
lattice = self.lattice
lattice.initialize()
nodeIndexi = self.nodeIndexi
nodeIndexf = self.nodeIndexf
Indexf = nodeIndexf + 1
sample = self.localDict["sample"]
multfrac = 1.0
if(sample == "Uniform"):
minimum = self.localDict["minimum"]
maximum = self.localDict["maximum"]
multfrac = minimum + (maximum - minimum) * random()
if(sample == "Gaussian"):
mean = self.localDict["mean"]
sigma = self.localDict["sigma"]
multfrac = gauss(mean, sigma)
disp = self.localDict["disp"] * multfrac
theta = 0.0
if(nodeIndexi > nodeIndexf):
Indexf = len(lattice.getNodes())
for node in lattice.getNodes()[0 : nodeIndexf + 1]:
if(not isinstance(node, BendTEAPOT)):
print "Node = ", node.getName(), " type = ",\
node.getType(), " L = ", node.getLength()
orbitFinalize("Can't add BendError around a Straight! Stop!")
else:
theta += node.getParam("theta")
for node in lattice.getNodes()[nodeIndexi : Indexf]:
if(not isinstance(node, BendTEAPOT)):
print "Node = ", node.getName(), " type = ",\
node.getType(), " L = ", node.getLength()
orbitFinalize("Can't add BendError around a Straight! Stop!")
else:
theta += node.getParam("theta")
nodei = lattice.getNodes()[nodeIndexi]
nodef = lattice.getNodes()[nodeIndexf]
if(self.localDict["subtype"] == "XDisp"):
errori = benddisplacementxi(theta, disp)
errorf = benddisplacementxf(theta, disp)
if(self.localDict["subtype"] == "YDisp"):
errori = benddisplacementyi(disp)
errorf = benddisplacementyf(disp)
if(self.localDict["subtype"] == "LongDisp"):
errori = benddisplacementli(theta, disp)
errorf = benddisplacementlf(theta, disp)
addErrorNodeAsChild_I(lattice, nodei, errori)
addErrorNodeAsChild_F(lattice, nodef, errorf)
def __init__(self, teapot_lattice, bunch, name = None):
MATRIX_Lattice.__init__(self,name)
if(isinstance(teapot_lattice,TEAPOT_Lattice) != True):
orbitFinalize("Constructor orbit.teapot.TEAPOT_MATRIX_Lattice needs the TEAPOT_Lattice instance.")
#memorize the TEAPOT LATTICE
if(name == None):
name = teapot_lattice.getName()
self.setName(name)
self.teapot_lattice = teapot_lattice
self.bunch = Bunch()
self.lost_bunch = Bunch()
bunch.copyEmptyBunchTo(self.bunch)
bunch.copyEmptyBunchTo(self.lost_bunch)
self.matrixGenerator = MatrixGenerator()
#----------make MATRIX lattice from TEAPOT
def twissAction(paramsDict):
node = paramsDict["node"]
bunch = paramsDict["bunch"]
active_index = node.getActivePartIndex()
n_parts = node.getnParts()
length = node.getLength(active_index)
if(isinstance(node,BaseTEAPOT) == True and isinstance(node,RingRFTEAPOT) == False):
self.matrixGenerator.initBunch(bunch)
node.track(paramsDict)
#bunch is ready
matrixNode = BaseMATRIX(node.getName()+"_"+str(active_index))
matrixNode.addParam("matrix_parent_node",node)
matrixNode.addParam("matrix_parent_node_type",node.getType())
matrixNode.addParam("matrix_parent_node_n_nodes",n_parts)
matrixNode.addParam("matrix_parent_node_active_index",active_index)
matrixNode.setLength(length)
self.matrixGenerator.calculateMatrix(bunch,matrixNode.getMatrix())
#print "============= name=",matrixNode.getName(),
#print " type=",matrixNode.getParam("matrix_parent_node_type"),
#print " L=",matrixNode.getLength()
self.addNode(matrixNode)
if(isinstance(node,RingRFTEAPOT) == True):
rf_node = RingRFTEAPOT(node.getName())
rf_node.setParamsDict(node.getParamsDict().copy())
self.addNode(rf_node)
accContainer = AccActionsContainer()
accContainer.addAction(twissAction,AccActionsContainer.BODY)
paramsDict = {}
paramsDict["bunch"] = self.bunch
paramsDict["lostbunch"] = self.lost_bunch
paramsDict["position"] = 0.
paramsDict["useCharge"] = self.teapot_lattice.getUseRealCharge()
self.teapot_lattice.trackActions(accContainer,paramsDict)
self.makeOneTurnMatrix()
self.initialize()
def checkType(self, name_in):
"""
Method. Confirms validity of element type.
"""
name = name_in.lower()
if (self.__names_type.count(name) == 0):
msg = "Error creating lattice element:"
msg = msg + os.linesep
msg = msg + "There is no element with type:" + name
msg = msg + os.linesep
msg = msg + "Stop."
msg = msg + os.linesep
orbitFinalize(msg)
return name_in
def track(self, paramsDict):
"""
The simplest RF gap class implementation of
the AccNode class track(probe) method.
"""
bunch = paramsDict["bunch"]
syncPart = bunch.getSyncParticle()
E0TL = self.getParam("E0TL")
E0L = self.getParam("E0L")
modePhase = self.getParam("mode")*math.pi
rfCavity = self.getRF_Cavity()
frequency = rfCavity.getFrequency()
phase = rfCavity.getPhase() + modePhase
rf_ampl = rfCavity.getAmp()
arrival_time = syncPart.time()
designArrivalTime = rfCavity.getDesignArrivalTime()
if(self.__isFirstGap):
if(rfCavity.isDesignSetUp()):
#print "debug RF =",self.getName()," phase=",(phase*180./math.pi - 180.)
phase = math.fmod(frequency*(arrival_time - designArrivalTime)*2.0*math.pi + phase,2.0*math.pi)
#print "debug RF =",self.getName()," phase=",(phase*180./math.pi - 180.)
else:
sequence = self.getSequence()
accLattice = sequence.getLinacAccLattice()
msg = "The BaseRF_Gap class. You have to run trackDesign on the LinacAccLattice first to initialize all RF Cavities' phases!"
msg = msg + os.linesep
if(accLattice != None):
msg = msg + "Lattice =" + accLattice.getName()
msg = msg + os.linesep
if(sequence != None):
msg = msg + "Sequence =" + sequence.getName()
msg = msg + os.linesep
msg = msg + "RF Cavity =" + rfCavity.getName()
msg = msg + os.linesep
msg = msg + "Name of element=" + self.getName()
msg = msg + os.linesep
msg = msg + "Type of element=" + self.getType()
msg = msg + os.linesep
orbitFinalize(msg)
else:
phase = math.fmod(frequency*(arrival_time - designArrivalTime)*2.0*math.pi+phase,2.0*math.pi)
#---- rf gap input phase -----
self.setGapPhase(phase)
#call rf gap model to track the bunch
if(isinstance(self.cppGapModel,MatrixRfGap) or isinstance(self.cppGapModel,BaseRfGap)):
self.cppGapModel.trackBunch(bunch,frequency,E0TL*rf_ampl,phase)
else:
self.ttf_track_bunch__(bunch,frequency,E0L*rf_ampl,phase)
def addTeapotCollimatorNode(lattice, position, collimator_node):
"""
It will put one Teapot collimation node in the lattice
"""
length_tolerance = 0.0001
lattice.initialize()
if(position > lattice.getLength() ):
position = lattice.getLength();
print "User-specified aperture position is larger than lattice length. Resetting it to lattice length."
collimator_node.setPosition(position);
position_start = position
position_stop = position + collimator_node.getLength()
(node_start_ind,node_stop_ind,z,ind) = (-1,-1, 0., 0)
for node in lattice.getNodes():
if(position_start >= z and position_start <= z + node.getLength()):
node_start_ind = ind
if(position_stop >= z and position_stop <= z + node.getLength()):
node_stop_ind = ind
ind += 1
z += node.getLength()
#-------now we check that between start and end we have only non-modified drift elements
#-------if the space charge was added first - that is a problem. The collimation should be added first.
for node in lattice.getNodes()[node_start_ind:node_stop_ind+1]:
#print "debug node=",node.getName()," type=",node.getType()," L=",node.getLength()
if(not isinstance(node,DriftTEAPOT)):
print "Non-drift node=",node.getName()," type=",node.getType()," L=",node.getLength()
orbitFinalize("We have non-drift element at the place of the collimator! Stop!")
#if(node.getNumberOfChildren() != 4):
#print "Node=",node.getName()," type=",node.getType()," L=",node.getLength()," N children nodes=",node.getNumberOfChildren()
#orbitFinalize("Drift element was modified with additional functionality (SC or something else)! Add collimation first! Stop!")
# make array of nodes from collimator in the center and possible two drifts if their length is more than length_tolerance [m]
nodes_new_arr = [collimator_node,]
drift_node_start = lattice.getNodes()[node_start_ind]
drift_node_stop = lattice.getNodes()[node_stop_ind]
#------now we will create two drift nodes: before the collimator and after
#------if the length of one of these additional drifts less than length_tollerance [m] we skip this drift
if(position_start > lattice.getNodePositionsDict()[drift_node_start][0] + length_tolerance):
drift_node_start_new = DriftTEAPOT(drift_node_start.getName())
drift_node_start_new.setLength(position_start - lattice.getNodePositionsDict()[drift_node_start][0])
nodes_new_arr.insert(0,drift_node_start_new)
if(position_stop < lattice.getNodePositionsDict()[drift_node_stop][1] - length_tolerance):
drift_node_stop_new = DriftTEAPOT(drift_node_stop.getName())
drift_node_stop_new.setLength(lattice.getNodePositionsDict()[drift_node_stop][1] - position_stop)
nodes_new_arr.append(drift_node_stop_new)
#------ now we will modify the lattice by replacing the found part with the new nodes
lattice.getNodes()[node_start_ind:node_stop_ind+1] = nodes_new_arr
# initialize the lattice
lattice.initialize()
def initialize(self):
"""
Method. Initializes the lattice and child node structures.
"""
res_dict = {}
for node in self.__children:
if(res_dict.has_key(node)):
msg = "The AccLattice class instance should not have duplicate nodes!"
msg = msg + os.linesep
msg = msg + "Method initialize():"
msg = msg + os.linesep
msg = msg + "Name of node=" + node.getName()
msg = msg + os.linesep
msg = msg + "Type of node=" + node.getType()
msg = msg + os.linesep
orbitFinalize(msg)
else:
res_dict[node] = None
node.initialize()
del res_dict
paramsDict = {}
actions = AccActionsContainer()
d = [0.]
posn = {}
def accNodeExitAction(paramsDict):
"""
Nonbound function. Sets lattice length and node
positions. This is a closure (well, maybe not
exactly). It uses external objects.
"""
node = paramsDict["node"]
parentNode = paramsDict["parentNode"]
if(isinstance(parentNode, AccLattice)):
posBefore = d[0]
d[0] += node.getLength()
posAfter = d[0]
posn[node]=(posBefore, posAfter)
actions.addAction(accNodeExitAction, AccNode.EXIT)
self.trackActions(actions, paramsDict)
self.__length = d[0]
self.__childPositions = posn
self.__isInitialized = True
def addTeapotDiagnosticsNode(lattice, position, diagnostics_node):
"""
It will put one Teapot diagnostics node in the lattice
"""
length_tollerance = 0.0001
lattice.initialize()
position_start = position
position_stop = position + diagnostics_node.getLength()
diagnostics_node.setPosition(position)
diagnostics_node.setLatticeLength(lattice.getLength())
(node_start_ind,node_stop_ind,z,ind) = (-1,-1, 0., 0)
for node in lattice.getNodes():
if(position_start >= z and position_start <= z + node.getLength()):
node_start_ind = ind
if(position_stop >= z and position_stop <= z + node.getLength()):
node_stop_ind = ind
ind += 1
z += node.getLength()
#-------now we check that between start and end we have only non-modified drift elements
#-------if the space charge was added first - that is a problem. The collimation should be added first.
for node in lattice.getNodes()[node_start_ind:node_stop_ind+1]:
#print "debug node=",node.getName()," type=",node.getType()," L=",node.getLength()
if(not isinstance(node,DriftTEAPOT)):
print "Non-drift node=",node.getName()," type=",node.getType()," L=",node.getLength()
orbitFinalize("We have non-drift element at the place of the diagnostics! Stop!")
# make array of nodes from diagnostics in the center and possible two drifts if their length is more than length_tollerance [m]
nodes_new_arr = [diagnostics_node,]
drift_node_start = lattice.getNodes()[node_start_ind]
drift_node_stop = lattice.getNodes()[node_stop_ind]
#------now we will create two drift nodes: before the diagnostics and after
#------if the length of one of these additional drifts less than length_tollerance [m] we skip this drift
if(position_start > lattice.getNodePositionsDict()[drift_node_start][0] + length_tollerance):
drift_node_start_new = DriftTEAPOT(drift_node_start.getName())
drift_node_start_new.setLength(position_start - lattice.getNodePositionsDict()[drift_node_start][0])
nodes_new_arr.insert(0,drift_node_start_new)
if(position_stop < lattice.getNodePositionsDict()[drift_node_stop][1] - length_tollerance):
drift_node_stop_new = DriftTEAPOT(drift_node_stop.getName())
drift_node_stop_new.setLength(lattice.getNodePositionsDict()[drift_node_stop][1] - position_stop)
nodes_new_arr.append(drift_node_stop_new)
#------ now we will modify the lattice by replacing the found part with the new nodes
lattice.getNodes()[node_start_ind:node_stop_ind+1] = nodes_new_arr
# initialize the lattice
lattice.initialize()
def initialize(self): """ The Ring RF TEAPOT class implementation of the AccNode class initialize() method. """ nParts = self.getnParts() if(nParts > 1): msg = "The Ring RF TEAPOT class instance should not have more than 1 part!" msg = msg + os.linesep msg = msg + "Method initialize():" msg = msg + os.linesep msg = msg + "Name of element=" + self.getName() msg = msg + os.linesep msg = msg + "Type of element=" + self.getType() msg = msg + os.linesep msg = msg + "nParts =" + str(nParts) msg = msg + os.linesep msg = msg + "length =" + str(self.getLength()) orbitFinalize(msg)
def setnParts(self, n = 1): """ Method. Sets the number of body parts of the node. """ if(self.getNumberOfBodyChildren() != 0): msg = "You cannot set the number of AccNode parts after you added children! Class AccNode" msg = msg + os.linesep msg = msg + "Method setnParts(n):" msg = msg + os.linesep msg = msg + "Name of element=" + self.getName() msg = msg + os.linesep msg = msg + "Type of element=" + self.getType() msg = msg + os.linesep msg = msg + "nParts =" + str(n) msg = msg + os.linesep msg = msg + "n children =" + str(self.getNumberOfChildren()) orbitFinalize(msg) self._setPartsLengthEvenly(n) self.initialize()
def initialize(self): """ The Ring RF TEAPOT class implementation of the AccNode class initialize() method. """ nParts = self.getnParts() if(nParts != 1): msg = "The simple Rf gap should have 1 parts!" msg = msg + os.linesep msg = msg + "Method initialize():" msg = msg + os.linesep msg = msg + "Name of element=" + self.getName() msg = msg + os.linesep msg = msg + "Type of element=" + self.getType() msg = msg + os.linesep msg = msg + "nParts =" + str(nParts) msg = msg + os.linesep msg = msg + "lenght =" + str(self.getLength()) orbitFinalize(msg) self.setLength(0.,0)
def rebuild(self, Ekin = -1.0):
if(Ekin > 0.):
self.bunch.getSyncParticle().kinEnergy(Ekin)
for matrixNode in self.getNodes():
if(isinstance(matrixNode,BaseMATRIX) == True):
node = matrixNode.getParam("matrix_parent_node")
active_index = matrixNode.getParam("matrix_parent_node_active_index")
n_parts = matrixNode.getParam("matrix_parent_node_n_nodes")
if(n_parts != node.getnParts()):
msg = " orbit.teapot.TEAPOT_MATRIX_Lattice class" + os.linesep
msg = msg + " rebuild(Ekin = -1.0) method" + os.linesep
msg = msg + " TEAPOT node="+node.getName() + os.linesep
msg = msg + " has been changed!" + os.linesep
msg = msg + " Stop!" + os.linesep
orbitFinalize(msg)
self.matrixGenerator.initBunch(self.bunch)
paramsDict = {}
paramsDict["bunch"] = self.bunch
paramsDict["node"] = node
node.setActivePartIndex(active_index)
node.track(paramsDict)
self.matrixGenerator.calculateMatrix(self.bunch,matrixNode.getMatrix())
self.makeOneTurnMatrix()
def initialize(self): """ The Quad Combined Function class implementation of the AccNode class initialize() method. """ nParts = self.getnParts() if(nParts < 2 and nParts%2 != 0): msg = "The Quad Combined Function class instance should have no less than 2 and even number of parts!" msg = msg + os.linesep msg = msg + "Method initialize():" msg = msg + os.linesep msg = msg + "Name of element=" + self.getName() msg = msg + os.linesep msg = msg + "Type of element=" + self.getType() msg = msg + os.linesep msg = msg + "nParts =" + str(nParts) orbitFinalize(msg) lengthIN = (self.getLength()/(nParts - 1))/2.0 lengthOUT = (self.getLength()/(nParts - 1))/2.0 lengthStep = lengthIN + lengthOUT self.setLength(lengthIN,0) self.setLength(lengthOUT,nParts - 1) for i in xrange(nParts-2): self.setLength(lengthStep,i+1)
def AddFieldError(self):
"""
Adds a FieldError to nodes at nodeIndexi to nodeIndexf
"""
lattice = self.lattice
lattice.initialize()
nodeIndexi = self.nodeIndexi
nodeIndexf = self.nodeIndexf
Indexf = nodeIndexf + 1
if(nodeIndexi > nodeIndexf):
Indexf = len(lattice.getNodes())
sample = self.localDict["sample"]
multfrac = 1.0
if(sample == "Uniform"):
minimum = self.localDict["minimum"]
maximum = self.localDict["maximum"]
multfrac = minimum + (maximum - minimum) * random()
if(sample == "Gaussian"):
mean = self.localDict["mean"]
sigma = self.localDict["sigma"]
multfrac = gauss(mean, sigma)
fracerr = self.localDict["fracerr"] * multfrac
if(self.localDict["subtype"] == "KickField"):
if(nodeIndexi > nodeIndexf):
for node in lattice.getNodes()[0 : nodeIndexf + 1]:
if(not isinstance(node, KickTEAPOT)):
print "node = ", node.getName(), " type = ",\
node.getType(), " L = ", node.getLength()
orbitFinalize("Field Error: Wanted a Kick node! Stop!")
kx = node.getParam("kx") * (1.0 + fracerr)
ky = node.getParam("ky") * (1.0 + fracerr)
node.setParam("kx", kx)
node.setParam("ky", ky)
for node in lattice.getNodes()[nodeIndexi : Indexf]:
if(not isinstance(node, KickTEAPOT)):
print "node = ", node.getName(), " type = ",\
node.getType(), " L = ", node.getLength()
orbitFinalize("Field Error: Wanted a Kick node! Stop!")
kx = node.getParam("kx") * (1.0 + fracerr)
ky = node.getParam("ky") * (1.0 + fracerr)
node.setParam("kx", kx)
node.setParam("ky", ky)
if(self.localDict["subtype"] == "SolenoidField"):
if(nodeIndexi > nodeIndexf):
for node in lattice.getNodes()[0 : nodeIndexf + 1]:
if(not isinstance(node, SolenoidTEAPOT)):
print "node = ", node.getName(), " type = ",\
node.getType(), " L = ", node.getLength()
orbitFinalize("Field Error: Wanted a Solenoid node! Stop!")
B = node.getParam("B") * (1.0 + fracerr)
node.setParam("B", B)
for node in lattice.getNodes()[nodeIndexi : Indexf]:
if(not isinstance(node, SolenoidTEAPOT)):
print "node = ", node.getName(), " type = ",\
node.getType(), " L = ", node.getLength()
orbitFinalize("Field Error: Wanted a Solenoid node! Stop!")
B = node.getParam("B") * (1.0 + fracerr)
node.setParam("B", B)
if(self.localDict["subtype"] == "MultipoleField"):
if(nodeIndexi > nodeIndexf):
for node in lattice.getNodes()[0 : nodeIndexf + 1]:
if(not isinstance(node, MultipoleTEAPOT)):
print "node = ", node.getName(), " type = ",\
node.getType(), " L = ", node.getLength()
orbitFinalize("Field Error: Wanted a Multipole node! Stop!")
klArr = node.getParam("kls")
for i in xrange(len(klArr)):
klArr[i] *= (1.0 + fracerr)
node.setParam("kls", klArr)
for node in lattice.getNodes()[nodeIndexi : Indexf]:
if(not isinstance(node, MultipoleTEAPOT)):
print "node = ", node.getName(), " type = ",\
node.getType(), " L = ", node.getLength()
orbitFinalize("Field Error: Wanted a Multipole node! Stop!")
klArr = node.getParam("kls")
for i in xrange(len(klArr)):
klArr[i] *= (1.0 + fracerr)
node.setParam("kls", klArr)
if(self.localDict["subtype"] == "QuadField"):
if(nodeIndexi > nodeIndexf):
for node in lattice.getNodes()[0 : nodeIndexf + 1]:
if(not isinstance(node, QuadTEAPOT)):
print "node = ", node.getName(), " type = ",\
node.getType(), " L = ", node.getLength()
orbitFinalize("Field Error: Wanted a Quadrupole node! Stop!")
kq = node.getParam("kq") * (1.0 + fracerr)
node.setParam("kq", kq)
klArr = node.getParam("kls")
for i in xrange(len(klArr)):
klArr[i] *= (1.0 + fracerr)
node.setParam("kls", klArr)
for node in lattice.getNodes()[nodeIndexi : Indexf]:
if(not isinstance(node, QuadTEAPOT)):
print "node = ", node.getName(), " type = ",\
node.getType(), " L = ", node.getLength()
orbitFinalize("Field Error: Wanted a Quadrupole node! Stop!")
kq = node.getParam("kq") * (1.0 + fracerr)
node.setParam("kq", kq)
klArr = node.getParam("kls")
for i in xrange(len(klArr)):
klArr[i] *= (1.0 + fracerr)
node.setParam("kls", klArr)
if(self.localDict["subtype"] == "BendField"):
if(nodeIndexi > nodeIndexf):
for node in lattice.getNodes()[0 : nodeIndexf + 1]:
if(not isinstance(node, BendTEAPOT)):
print "node = ", node.getName(), " type = ",\
node.getType(), " L = ", node.getLength()
orbitFinalize("Field Error: Wanted a Bend node! Stop!")
klArr = node.getParam("kls")
for i in xrange(len(klArr)):
klArr[i] *= (1.0 + fracerr)
node.setParam("kls", klArr)
for node in lattice.getNodes()[nodeIndexi : Indexf]:
if(not isinstance(node, BendTEAPOT)):
print "node = ", node.getName(), " type = ",\
node.getType(), " L = ", node.getLength()
orbitFinalize("Field Error: Wanted a Bend node! Stop!")
klArr = node.getParam("kls")
for i in xrange(len(klArr)):
klArr[i] *= (1.0 + fracerr)
node.setParam("kls", klArr)
nodei = lattice.getNodes()[nodeIndexi]
nodef = lattice.getNodes()[nodeIndexf]
drhoi = -nodei.getParam("rho") * fracerr / (1.0 + fracerr)
drhof = -nodef.getParam("rho") * fracerr / (1.0 + fracerr)
errori = bendfieldi(drhoi)
errorf = bendfieldf(drhof)
addErrorNodeAsChild_I(lattice, nodei, errori)
addErrorNodeAsChild_F(lattice, nodef, errorf)
def AddStraightError(self):
"""
Adds a StraightError to nodes
between nodeIndexi and nodeIndexf.
"""
lattice = self.lattice
lattice.initialize()
nodeIndexi = self.nodeIndexi
nodeIndexf = self.nodeIndexf
Indexf = nodeIndexf + 1
if(nodeIndexi > nodeIndexf):
Indexf = len(lattice.getNodes())
for node in lattice.getNodes()[0 : nodeIndexf + 1]:
if(isinstance(node, BendTEAPOT)):
print "Bend node = ", node.getName(), " type = ",\
node.getType(), " L = ", node.getLength()
orbitFinalize("Can't add StraightError around a Bend! Stop!")
for node in lattice.getNodes()[nodeIndexi : Indexf]:
if(isinstance(node, BendTEAPOT)):
print "Bend node = ", node.getName(), " type = ",\
node.getType(), " L = ", node.getLength()
orbitFinalize("Can't add StraightError around a Bend! Stop!")
nodei = lattice.getNodes()[nodeIndexi]
nodef = lattice.getNodes()[nodeIndexf]
sample = self.localDict["sample"]
if(self.localDict["subtype"] == "TransDisp"):
multdx = 1.0
multdy = 1.0
if(sample == "Uniform"):
minimum = self.localDict["minimum"]
maximum = self.localDict["maximum"]
multdx = minimum + (maximum - minimum) * random()
multdy = minimum + (maximum - minimum) * random()
if(sample == "Gaussian"):
mean = self.localDict["mean"]
sigma = self.localDict["sigma"]
multdx = gauss(mean, sigma)
multdy = gauss(mean, sigma)
dx = self.localDict["dx"] * multdx
dy = self.localDict["dy"] * multdy
errori = coorddisplacement( dx, 0.0, dy, 0.0, 0.0, 0.0)
errorf = coorddisplacement(-dx, 0.0, -dy, 0.0, 0.0, 0.0)
if(self.localDict["subtype"] == "LongDisp"):
multds = 1.0
if(sample == "Uniform"):
minimum = self.localDict["minimum"]
maximum = self.localDict["maximum"]
multds = minimum + (maximum - minimum) * random()
if(sample == "Gaussian"):
mean = self.localDict["mean"]
sigma = self.localDict["sigma"]
multds = gauss(mean, sigma)
ds = self.localDict["ds"] * multds
errori = longdisplacement(ds)
errorf = longdisplacement(-ds)
if(self.localDict["subtype"] == "XYRot"):
multangle = 1.0
if(sample == "Uniform"):
minimum = self.localDict["minimum"]
maximum = self.localDict["maximum"]
multangle = minimum + (maximum - minimum) * random()
if(sample == "Gaussian"):
mean = self.localDict["mean"]
sigma = self.localDict["sigma"]
multangle = gauss(mean, sigma)
angle = self.localDict["angle"] * multangle
errori = straightrotationxy( angle)
errorf = straightrotationxy(-angle)
if(self.localDict["subtype"] == "XSRot"):
multangle = 1.0
if(sample == "Uniform"):
minimum = self.localDict["minimum"]
maximum = self.localDict["maximum"]
multangle = minimum + (maximum - minimum) * random()
if(sample == "Gaussian"):
mean = self.localDict["mean"]
sigma = self.localDict["sigma"]
multangle = gauss(mean, sigma)
angle = self.localDict["angle"] * multangle
if(self.zf >= self.zi):
lengtherr = self.zf - self.zi
else:
lengtherr = lattice.getLength() - self.zf + self.zi
errori = straightrotationxsi(angle, lengtherr)
errorf = straightrotationxsf(angle, lengtherr)
if(self.localDict["subtype"] == "YSRot"):
multangle = 1.0
if(sample == "Uniform"):
minimum = self.localDict["minimum"]
maximum = self.localDict["maximum"]
multangle = minimum + (maximum - minimum) * random()
if(sample == "Gaussian"):
mean = self.localDict["mean"]
sigma = self.localDict["sigma"]
multangle = gauss(mean, sigma)
angle = self.localDict["angle"] * multangle
if(self.zf >= self.zi):
lengtherr = self.zf - self.zi
else:
lengtherr = lattice.getLength() - self.zf + self.zi
errori = straightrotationysi(angle, lengtherr)
errorf = straightrotationysf(angle, lengtherr)
addErrorNodeAsChild_I(lattice, nodei, errori)
addErrorNodeAsChild_F(lattice, nodef, errorf)
def getLinacAccLatticeFromDA(self,names,acc_da):
"""
Returns the linac accelerator lattice for specified sequence names.
"""
if(len(names) < 1):
msg = "The SNS_LinacLatticeFactory method getLinacAccLatticeFromDA(names,): you have to specify the names array!"
msg = msg + os.linesep
msg = msg + "Stop."
msg = msg + os.linesep
orbitFinalize(msg)
#----- let's parse the XML DataAdaptor
accSeq_da_arr = acc_da.childAdaptors()
#let's check that the names in good order ==start==
seqencesLocal = accSeq_da_arr
seqencesLocalNames = []
for seq_da in seqencesLocal:
seqencesLocalNames.append(seq_da.getName())
ind_old = -1
count = 0
for name in names:
ind = seqencesLocalNames.index(name)
if(ind < 0 or (count > 0 and ind != (ind_old + 1))):
msg = "The LinacLatticeFactory method getLinacAccLattice(names): sequence names array is wrong!"
msg = msg + os.linesep
msg = msg + "existing names=" + str(seqencesLocalNames)
msg = msg + os.linesep
msg = msg + "sequence names="+str(names)
orbitFinalize(msg)
ind_old = ind
count += 1
# let's check that the names in good order ==stop==
ind_start = seqencesLocalNames.index(names[0])
accSeq_da_arr = accSeq_da_arr[ind_start:ind_start+len(names)]
#----make linac lattice
linacAccLattice = LinacAccLattice(acc_da.getName())
#There are the folowing possible types of elements in the linac tree:
#QUAD - quadrupole
#RFGAP - RF Gap
#DCH - horizontal dipole corrector
#DCV - vertical dipole corrector
#Marker - anything else with the length equals to 0
#Before putting enerything into the linacAccLattice we will create sequences
# with all nodes.
#----------------------------------------------------------------------
# The DRIFTS will be generated additionally and put into right places
#----------------------------------------------------------------------
def positionComp(node1_da,node2_da):
if(node1_da.getParam("pos") > node2_da.getParam("pos")):
return 1
else:
if(node1_da.getParam("pos") == node2_da.getParam("pos")):
return 0
return -1
accSeqs = []
accRF_Cavs = []
seqPosition = 0.
for seq_da in accSeq_da_arr:
#print "debug === seq=",seq_da.getName()
accSeq = Sequence(seq_da.getName())
accSeq.setLinacAccLattice(linacAccLattice)
accSeq.setLength(seq_da.doubleValue("length"))
accSeq.setPosition(seqPosition)
seqPosition = seqPosition + accSeq.getLength()
accSeqs.append(accSeq)
#---- BPM frequnecy for this sequence
bpmFrequency = seq_da.doubleValue("bpmFrequency")
#---- create RF Cavities
if(len(seq_da.childAdaptors("Cavities")) == 1):
cavs_da = seq_da.childAdaptors("Cavities")[0]
cav_da_arr = cavs_da.childAdaptors("Cavity")
for cav_da in cav_da_arr:
frequency = cav_da.doubleValue("frequency")
cav_amp = cav_da.doubleValue("ampl")
cav_name = cav_da.stringValue("name")
cav_pos = cav_da.doubleValue("pos")
cav = RF_Cavity(cav_name)
cav.setAmp(cav_amp)
cav.setFrequency(frequency)
cav.setPosition(cav_pos)
accSeq.addRF_Cavity(cav)
#----------------------------
#node_da_arr - array of nodes. These nodes are not AccNodes. They are XmlDataAdaptor class instances
node_da_arr = seq_da.childAdaptors("accElement")
#put nodes in order according to the position in the sequence
for node_da in node_da_arr:
node_da.setParam("pos",node_da.doubleValue("pos"))
node_da_arr.sort(positionComp)
#thinNodes - array of accNode nodes with zero length
#They can be positioned inside the thick nodes, and this will be done at the end
#of this method
thinNodes = []
for node_da in node_da_arr:
params_da = node_da.childAdaptors("parameters")[0]
node_type = node_da.stringValue("type")
node_length = node_da.doubleValue("length")
node_pos = node_da.getParam("pos")
#------------QUAD-----------------
if(node_type == "QUAD"):
accNode = Quad(node_da.stringValue("name"))
accNode.setParam("dB/dr",params_da.doubleValue("field"))
accNode.setParam("field",params_da.doubleValue("field"))
accNode.setLength(params_da.doubleValue("effLength"))
if(params_da.hasAttribute("poles")):
accNode.setParam("poles",[int(x) for x in eval(params_da.stringValue("poles"))])
if(params_da.hasAttribute("kls")):
accNode.setParam("kls", [x for x in eval(params_da.stringValue("kls"))])
if(params_da.hasAttribute("skews")):
accNode.setParam("skews",[int(x) for x in eval(params_da.stringValue("skews"))])
if(0.5*accNode.getLength() > self.maxDriftLength):
accNode.setnParts(2*int(0.5*accNode.getLength()/self.maxDriftLength + 1.5 - 1.0e-12))
accNode.setParam("pos",node_pos)
if(params_da.hasAttribute("aperture") and params_da.hasAttribute("aprt_type")):
accNode.setParam("aprt_type",params_da.intValue("aprt_type"))
accNode.setParam("aperture",params_da.doubleValue("aperture"))
accSeq.addNode(accNode)
#------------BEND-----------------
elif(node_type == "BEND"):
accNode = Bend(node_da.stringValue("name"))
if(params_da.hasAttribute("poles")):
accNode.setParam("poles",[int(x) for x in eval(params_da.stringValue("poles"))])
if(params_da.hasAttribute("kls")):
accNode.setParam("kls", [x for x in eval(params_da.stringValue("kls"))])
if(params_da.hasAttribute("skews")):
accNode.setParam("skews",[int(x) for x in eval(params_da.stringValue("skews"))])
accNode.setParam("ea1",params_da.doubleValue("ea1"))
accNode.setParam("ea2",params_da.doubleValue("ea2"))
accNode.setParam("theta",params_da.doubleValue("theta"))
accNode.setLength(params_da.doubleValue("effLength"))
if(0.5*accNode.getLength() > self.maxDriftLength):
accNode.setnParts(2*int(0.5*accNode.getLength()/self.maxDriftLength + 1.5 - 1.0e-12))
accNode.setParam("pos",node_pos)
accSeq.addNode(accNode)
#------------RF_Gap-----------------
elif(node_type == "RFGAP"):
accNode = BaseRF_Gap(node_da.stringValue("name"))
accNode.setLength(0.)
accNode.setParam("E0TL",params_da.doubleValue("E0TL"))
accNode.setParam("E0L",params_da.doubleValue("E0L"))
accNode.setParam("mode",params_da.doubleValue("mode"))
accNode.setParam("gap_phase",params_da.doubleValue("phase")*math.pi/180.)
accNode.setParam("EzFile",params_da.stringValue("EzFile"))
cav_name = params_da.stringValue("cavity")
cav = accSeq.getRF_Cavity(cav_name)
cav.addRF_GapNode(accNode)
if(accNode.isFirstRFGap()):
cav.setPhase(accNode.getParam("gap_phase"))
#---- TTFs parameters
ttfs_da = node_da.childAdaptors("TTFs")[0]
accNode.setParam("beta_min",ttfs_da.doubleValue("beta_min"))
accNode.setParam("beta_max",ttfs_da.doubleValue("beta_max"))
(polyT,polyS,polyTp,polySp) = accNode.getTTF_Polynimials()
polyT_da = ttfs_da.childAdaptors("polyT")[0]
polyS_da = ttfs_da.childAdaptors("polyS")[0]
polyTp_da = ttfs_da.childAdaptors("polyTP")[0]
polySp_da = ttfs_da.childAdaptors("polySP")[0]
polyT.order(polyT_da.intValue("order"))
polyS.order(polyS_da.intValue("order"))
polyTp.order(polyTp_da.intValue("order"))
polySp.order(polySp_da.intValue("order"))
coef_arr = polyT_da.doubleArrayValue("pcoefs")
for coef_ind in range(len(coef_arr)):
polyT.coefficient(coef_ind,coef_arr[coef_ind])
coef_arr = polyS_da.doubleArrayValue("pcoefs")
for coef_ind in range(len(coef_arr)):
polyS.coefficient(coef_ind,coef_arr[coef_ind])
coef_arr = polyTp_da.doubleArrayValue("pcoefs")
for coef_ind in range(len(coef_arr)):
polyTp.coefficient(coef_ind,coef_arr[coef_ind])
coef_arr = polySp_da.doubleArrayValue("pcoefs")
for coef_ind in range(len(coef_arr)):
polySp.coefficient(coef_ind,coef_arr[coef_ind])
accNode.setParam("pos",node_pos)
accSeq.addNode(accNode)
else:
if(node_length != 0.):
msg = "The LinacLatticeFactory method getLinacAccLattice(names): there is a strange element!"
msg = msg + os.linesep
msg = msg + "name=" + node_da.stringValue("name")
msg = msg + os.linesep
msg = msg + "type="+node_type
msg = msg + os.linesep
msg = msg + "length(should be 0.)="+str(node_length)
orbitFinalize(msg)
#------ thin nodes analysis
accNode = None
if(node_type == "DCV" or node_type == "DCH"):
if(node_type == "DCV"): accNode = DCorrectorV(node_da.stringValue("name"))
if(node_type == "DCH"): accNode = DCorrectorH(node_da.stringValue("name"))
accNode.setParam("effLength",params_da.doubleValue("effLength"))
else:
accNode = MarkerLinacNode(node_da.stringValue("name"))
accNode.setParam("pos",node_pos)
thinNodes.append(accNode)
#----- assign the thin nodes that are inside the thick nodes
unusedThinNodes = []
for thinNode in thinNodes:
thinNode_pos = thinNode.getParam("pos")
isInside = False
for accNode in accSeq.getNodes():
length = accNode.getLength()
if(length > 0.):
pos = accNode.getParam("pos")
if(thinNode_pos >= (pos-length/2) and thinNode_pos <= (pos+length/2)):
isInside = True
delta_pos = thinNode_pos - (pos-length/2)
s_path = 0.
part_ind_in = -1
for part_ind in range(accNode.getnParts()):
part_ind_in = part_ind
s_path += accNode.getLength(part_ind)
if(delta_pos <= s_path + self.zeroDistance):
break
accNode.addChildNode(thinNode, place = AccNode.BODY, part_index = part_ind_in , place_in_part = AccNode.AFTER)
thinNode.setParam("pos",(pos-length/2)+s_path)
if(not isInside):
unusedThinNodes.append(thinNode)
thinNodes = unusedThinNodes
newAccNodes = accSeq.getNodes()[:] + thinNodes
newAccNodes.sort(positionComp)
accSeq.setNodes(newAccNodes)
#insert the drifts ======================start ===========================
#-----now check the integrety quads and rf_gaps should not overlap
#-----and create drifts
copyAccNodes = accSeq.getNodes()[:]
firstNode = copyAccNodes[0]
lastNode = copyAccNodes[len(copyAccNodes)-1]
driftNodes_before = []
driftNodes_after = []
#insert the drift before the first element if its half length less than its position
if(math.fabs(firstNode.getLength()/2.0 - firstNode.getParam("pos")) > self.zeroDistance):
if(firstNode.getLength()/2.0 > firstNode.getParam("pos")):
msg = "The LinacLatticeFactory method getLinacAccLattice(names): the first node is too long!"
msg = msg + os.linesep
msg = msg + "name=" + firstNode.getName()
msg = msg + os.linesep
msg = msg + "type=" + firstNode.getType()
msg = msg + os.linesep
msg = msg + "length=" + str(firstNode.getLength())
msg = msg + os.linesep
msg = msg + "pos=" + str(firstNode.getParam("pos"))
orbitFinalize(msg)
else:
driftNodes = []
driftLength = firstNode.getParam("pos") - firstNode.getLength()/2.0
nDrifts = int(driftLength/self.maxDriftLength) + 1
driftLength = driftLength/nDrifts
for idrift in range(nDrifts):
drift = Drift(accSeq.getName()+":"+firstNode.getName()+":"+str(idrift+1)+":drift")
drift.setLength(driftLength)
drift.setParam("pos",0.+drift.getLength()*(idrift+0.5))
driftNodes.append(drift)
driftNodes_before = driftNodes
#insert the drift after the last element if its half length less + position is less then the sequence length
if(math.fabs(lastNode.getLength()/2.0 + lastNode.getParam("pos") - accSeq.getLength()) > self.zeroDistance):
if(lastNode.getLength()/2.0 + lastNode.getParam("pos") > accSeq.getLength()):
msg = "The LinacLatticeFactory method getLinacAccLattice(names): the last node is too long!"
msg = msg + os.linesep
msg = msg + "name=" + lastNode.getName()
msg = msg + os.linesep
msg = msg + "type=" + lastNode.getType()
msg = msg + os.linesep
msg = msg + "length=" + str(lastNode.getLength())
msg = msg + os.linesep
msg = msg + "pos=" + str(lastNode.getParam("pos"))
msg = msg + os.linesep
msg = msg + "sequence name=" + accSeq.getName()
msg = msg + os.linesep
msg = msg + "sequence length=" + str(accSeq.getLength())
orbitFinalize(msg)
else:
driftNodes = []
driftLength = accSeq.getLength() - (lastNode.getParam("pos") + lastNode.getLength()/2.0)
nDrifts = int(driftLength/self.maxDriftLength) + 1
driftLength = driftLength/nDrifts
for idrift in range(nDrifts):
drift = Drift(accSeq.getName()+":"+lastNode.getName()+":"+str(idrift+1)+":drift")
drift.setLength(driftLength)
drift.setParam("pos",lastNode.getParam("pos")+lastNode.getLength()/2.0 + drift.getLength()*(idrift+0.5))
driftNodes.append(drift)
driftNodes_after = driftNodes
#now move on and generate drifts between (i,i+1) nodes from copyAccNodes
newAccNodes = driftNodes_before
for node_ind in range(len(copyAccNodes)-1):
accNode0 = copyAccNodes[node_ind]
newAccNodes.append(accNode0)
accNode1 = copyAccNodes[node_ind+1]
dist = accNode1.getParam("pos") - accNode1.getLength()/2 - (accNode0.getParam("pos") + accNode0.getLength()/2)
if(dist < 0.):
msg = "The LinacLatticeFactory method getLinacAccLattice(names): two nodes are overlapping!"
msg = msg + os.linesep
msg = msg + "sequence name=" + accSeq.getName()
msg = msg + os.linesep
msg = msg + "node 0 name=" + accNode0.getName() + " pos="+ str(accNode0.getParam("pos")) + " L="+str(accNode0.getLength())
msg = msg + os.linesep
msg = msg + "node 1 name=" + accNode1.getName() + " pos="+ str(accNode1.getParam("pos")) + " L="+str(accNode1.getLength())
msg = msg + os.linesep
orbitFinalize(msg)
elif(dist > self.zeroDistance):
driftNodes = []
nDrifts = int(dist/self.maxDriftLength) + 1
driftLength = dist/nDrifts
for idrift in range(nDrifts):
drift = Drift(accSeq.getName()+":"+accNode0.getName()+":"+str(idrift+1)+":drift")
drift.setLength(driftLength)
drift.setParam("pos",accNode0.getParam("pos")+accNode0.getLength()*0.5+drift.getLength()*(idrift+0.5))
driftNodes.append(drift)
newAccNodes += driftNodes
else:
pass
newAccNodes.append(lastNode)
newAccNodes += driftNodes_after
accSeq.setNodes(newAccNodes)
#insert the drifts ======================stop ===========================
#add all AccNodes to the linac lattice
for accNode in accSeq.getNodes():
linacAccLattice.addNode(accNode)
#------- finalize the lattice construction
linacAccLattice.initialize()
return linacAccLattice
def AddRotationError(self):
"""
Adds a RotationError to nodes
between nodeIndexi and nodeIndexf.
"""
lattice = self.lattice
lattice.initialize()
nodeIndexi = self.nodeIndexi
nodeIndexf = self.nodeIndexf
Indexf = nodeIndexf + 1
sample = self.localDict["sample"]
multfrac = 1.0
if(sample == "Uniform"):
minimum = self.localDict["minimum"]
maximum = self.localDict["maximum"]
multfrac = minimum + (maximum - minimum) * random()
if(sample == "Gaussian"):
mean = self.localDict["mean"]
sigma = self.localDict["sigma"]
multfrac = gauss(mean, sigma)
angle = self.localDict["angle"] * multfrac
#print "multfrac, angle = ", multfrac, angle
rhoi = 0.0
theta = 0.0
if(self.zf >= self.zi):
lengtherr = self.zf - self.zi
else:
lengtherr = lattice.getLength() - self.zf + self.zi
et = self.localDict["elementtype"]
rotype = self.localDict["subtype"]
if((et == "SBEN") or (et == "sbend") or (et == "rbend")):
if(nodeIndexi > nodeIndexf):
Indexf = len(lattice.getNodes())
for node in lattice.getNodes()[0 : nodeIndexf + 1]:
if(not isinstance(node, BendTEAPOT)):
print "Node = ", node.getName(), " type = ",\
node.getType(), " L = ", node.getLength()
orbitFinalize("Can't add BendError around a Straight! Stop!")
else:
rhoi = 1.0 / node.getParam("rho")
theta += node.getParam("theta")
for node in lattice.getNodes()[nodeIndexi : Indexf]:
if(not isinstance(node, BendTEAPOT)):
print "Node = ", node.getName(), " type = ",\
node.getType(), " L = ", node.getLength()
orbitFinalize("Can't add BendError around a Straight! Stop!")
else:
rhoi = 1.0 / node.getParam("rho")
theta += node.getParam("theta")
else:
if(nodeIndexi > nodeIndexf):
Indexf = len(lattice.getNodes())
for node in lattice.getNodes()[0 : nodeIndexf + 1]:
if(isinstance(node, BendTEAPOT)):
print "Node = ", node.getName(), " type = ",\
node.getType(), " L = ", node.getLength()
orbitFinalize("Can't add StraigtError around a Bend! Stop!")
for node in lattice.getNodes()[nodeIndexi : Indexf]:
if(isinstance(node, BendTEAPOT)):
print "Node = ", node.getName(), " type = ",\
node.getType(), " L = ", node.getLength()
orbitFinalize("Can't add StraigtError around a Bend! Stop!")
nodei = lattice.getNodes()[nodeIndexi]
nodef = lattice.getNodes()[nodeIndexf]
errori = rotationi(angle, rhoi, theta, lengtherr, et, rotype)
errorf = rotationf(angle, rhoi, theta, lengtherr, et, rotype)
addErrorNodeAsChild_I(lattice, nodei, errori)
addErrorNodeAsChild_F(lattice, nodef, errorf)
def addErrorNode(lattice, position, Error_Node):
"""
This will put one error node into the lattice
"""
length_tolerance = 0.0001
lattice.initialize()
position_start = position
position_stop = position + Error_Node.getLength()
(node_start_ind, node_stop_ind, z, ind) = (-1, -1, 0.0, 0)
for node in lattice.getNodes():
if(position_start >= z and position_start <= z + node.getLength()):
node_start_ind = ind
if(position_stop >= z and position_stop <= z + node.getLength()):
node_stop_ind = ind
ind += 1
z += node.getLength()
"""
Check that between start and end there are only non-modified
drift elements. If space charge was added first - that is a problem.
The collimation should be added first.
"""
for node in lattice.getNodes()[node_start_ind:node_stop_ind + 1]:
"""
print "debug node = ", node.getName(), " type = ", node.getType(),\
" L = ", node.getLength()
"""
if(not isinstance(node, DriftTEAPOT)):
print "Non-drift node = ", node.getName(), " type = ",\
node.getType(), " L = ", node.getLength()
orbitFinalize("We have non-drift element at the place of \
the error node! Stop!")
"""
if(node.getNumberOfChildren() != 4):
print "Node = ", node.getName()," type = ", node.getType(),\
" L = ", node.getLength(), " N child nodes = ",\
node.getNumberOfChildren()
orbitFinalize("Drift element was modified with additional \
functionality (SC or something else)! Add collimation first! \
Stop!")
"""
"""
Make array of nodes with error node in the center and two possible drifts,
if their length is more than length_tollerance [m]
"""
nodes_new_arr = [Error_Node,]
drift_node_start = lattice.getNodes()[node_start_ind]
drift_node_stop = lattice.getNodes()[node_stop_ind]
"""
Now create two drift nodes: before and after the error node.
If the length of either of these additional drifts is less than
length_tollerance [m], skip this drift.
"""
if(position_start > lattice.getNodePositionsDict()[drift_node_start][0] +\
length_tolerance):
drift_node_start_new = DriftTEAPOT(drift_node_start.getName())
drift_node_start_new.setLength(position_start -\
lattice.getNodePositionsDict()[drift_node_start][0])
nodes_new_arr.insert(0, drift_node_start_new)
if(position_stop < lattice.getNodePositionsDict()[drift_node_stop][1] -\
length_tolerance):
drift_node_stop_new = DriftTEAPOT(drift_node_stop.getName())
drift_node_stop_new.setLength(lattice.getNodePositionsDict()[drift_node_stop][1] -\
position_stop)
nodes_new_arr.append(drift_node_stop_new)
"""
Now modify the lattice by replacing the old part with the new nodes
"""
lattice.getNodes()[node_start_ind:node_stop_ind + 1] = nodes_new_arr
"""
Initialize the lattice
"""
lattice.initialize()
def trackTwissData(self, alpha, beta, direction = "x"):
"""
Returns the tuple ([(position, phase advance/2/pi),...], [(position, alpha),...],[(position,beta),...] ).
The tracking starts from the values specified as the initial parameters.
The possible values for direction parameter "x" or "y".
"""
if(direction.lower() != "x" and direction.lower() != "y"):
orbitFinalize("Class orbit.matrix_lattice.MATRIX_Lattice, method trackTwissData(...): direction should be x or y.")
#track twiss
eps_length = 0.00001 # 10^-6 meter
dir_ind = 0
if(direction.lower() == "y"):
dir_ind = 2
gamma = (1.0+alpha*alpha)/beta
track_m = Matrix(3,3)
track_m.unit()
track_v = PhaseVector(3)
track_v.set(0,alpha)
track_v.set(1,beta)
track_v.set(2,gamma)
position = 0.
pos_arr = []
alpha_arr = []
beta_arr = []
#phi is for tune accumulation
phi = 0.
#phase advance
mu_arr = []
#put in array the initial twiss
pos_arr.append(position)
mu_arr.append(phi)
alpha_arr.append(track_v.get(0))
beta_arr.append(track_v.get(1))
position_old = position
beta_old = beta
#count = 0
for matrixNode in self.getNodes():
if(isinstance(matrixNode,BaseMATRIX) == True):
beta = track_v.get(1)
if(abs(position_old-position) > eps_length or abs(beta_old - beta) > eps_length):
pos_arr.append(position)
alpha_arr.append(track_v.get(0))
beta_arr.append(track_v.get(1))
mu_arr.append(phi/(2*math.pi))
mt = matrixNode.getMatrix()
ind0 = 0+dir_ind
ind1 = 1+dir_ind
track_m.set(0,0,mt.get(ind0,ind0)*mt.get(ind1,ind1)+mt.get(ind0,ind1)*mt.get(ind1,ind0))
track_m.set(0,1,-mt.get(ind0,ind0)*mt.get(ind1,ind0))
track_m.set(0,2,-mt.get(ind0,ind1)*mt.get(ind1,ind1))
track_m.set(1,0,-2*mt.get(ind0,ind0)*mt.get(ind0,ind1))
track_m.set(1,1,mt.get(ind0,ind0)*mt.get(ind0,ind0))
track_m.set(1,2,mt.get(ind0,ind1)*mt.get(ind0,ind1))
track_m.set(2,0,-2*mt.get(ind1,ind0)*mt.get(ind1,ind1))
track_m.set(2,1,mt.get(ind1,ind0)*mt.get(ind1,ind0))
track_m.set(2,2,mt.get(ind1,ind1)*mt.get(ind1,ind1))
alpha_0 = track_v.get(0)
beta_0 = track_v.get(1)
delta_phi = math.atan( mt.get(ind0,ind1)/( beta_0*mt.get(ind0,ind0) - alpha_0*mt.get(ind0,ind1)))
phi = phi + delta_phi
track_v = track_m.mult(track_v)
position_old = position
beta_old = beta_0
position = position + matrixNode.getLength()
#count = count + 1
pos_arr.append(position)
alpha_arr.append(track_v.get(0))
beta_arr.append(track_v.get(1))
mu_arr.append(phi/(2*math.pi))
#pack the resulting tuple
tune = phi/(2*math.pi)
graph_alpha_arr = []
graph_beta_arr = []
graph_mu_arr = []
for i in range(len(pos_arr)):
graph_mu_arr.append((pos_arr[i], mu_arr[i]))
graph_alpha_arr.append((pos_arr[i],alpha_arr[i]))
graph_beta_arr.append((pos_arr[i],beta_arr[i]))
return (graph_mu_arr,graph_alpha_arr,graph_beta_arr)
def trackDispersionData(self,momentum,mass, disp, disp_p, direction = "x"):
"""
Returns the tuple ([(position, disp),...],[(position,disp_p),...] ).
The tracking starts from the values specified as the initial parameters.
The possible values for direction parameter "x" or "y".
"""
if(direction.lower() != "x" and direction.lower() != "y"):
orbitFinalize("Class orbit.matrix_lattice.MATRIX_Lattice, method trackDispersionData(...): direction should be x or y.")
#track dispersion
eps_length = 0.00001 # 10^-6 meter
dir_ind = 0
if(direction.lower() == "y"):
dir_ind = 2
track_m = Matrix(3,3)
track_m.unit()
track_m.set(2,0,0.)
track_m.set(2,1,0.)
track_m.set(2,2,1.)
track_v = PhaseVector(3)
#kinematics coefficient calculation
Etotal = math.sqrt(momentum**2 + mass**2)
beta = momentum/Etotal
gamma = Etotal/mass
Ekin = Etotal - mass
m_coeff = momentum*momentum/(mass + Ekin)
track_v.set(0,disp)
track_v.set(1,disp_p)
track_v.set(2,1.)
position = 0.
pos_arr = []
disp_arr = []
disp_p_arr = []
#put in array the initial dispersions
pos_arr.append(position)
disp_arr.append(track_v.get(0))
disp_p_arr.append(track_v.get(1))
position_old = position
disp_old = disp
#count = 0
for matrixNode in self.getNodes():
if(isinstance(matrixNode,BaseMATRIX) == True):
disp = track_v.get(0)
if(abs(position_old-position) > eps_length or abs(disp_old - disp) > eps_length):
pos_arr.append(position)
disp_arr.append(track_v.get(0))
disp_p_arr.append(track_v.get(1))
disp_old = disp
position_old = position
mt = matrixNode.getMatrix()
ind0 = 0+dir_ind
ind1 = 1+dir_ind
track_m.set(0,0,mt.get(ind0,ind0))
track_m.set(0,1,mt.get(ind0,ind1))
track_m.set(1,0,mt.get(ind1,ind0))
track_m.set(1,1,mt.get(ind1,ind1))
track_m.set(0,2,mt.get(ind0,5)*m_coeff)
track_m.set(1,2,mt.get(ind1,5)*m_coeff)
track_v = track_m.mult(track_v)
position = position + matrixNode.getLength()
pos_arr.append(position)
disp_arr.append(track_v.get(0))
disp_p_arr.append(track_v.get(1))
#pack the resulting tuple
graph_disp_arr = []
graph_disp_p_arr = []
for i in range(len(pos_arr)):
graph_disp_arr.append((pos_arr[i],disp_arr[i]))
graph_disp_p_arr.append((pos_arr[i],disp_p_arr[i]))
return (graph_disp_arr,graph_disp_p_arr)
