def test_researcher_urls(models):
org = Organisation.get()
raw_data0 = readup_test_data("researchurls.json", "r")
data0 = load_yaml_json("researchurls.json", raw_data0)
assert isinstance(data0, list) and isinstance(data0[0], NestedDict)
task0 = PropertyRecord.load_from_json(filename="researchurls000.json",
source=raw_data0,
org=org,
file_property_type="URL")
data = task0.to_dict(recurse=True)
raw_data = json.dumps(data, cls=JSONEncoder)
task = PropertyRecord.load_from_json(filename="researchurls001.json",
source=raw_data,
org=org,
file_property_type="URL")
assert len(data0) == len(task.to_dict(recurse=True)["records"])
def test_researcher_urls(models):
org = Organisation.select().first()
raw_data0 = open(
os.path.join(os.path.dirname(__file__), "data", "researchurls.json"),
"r").read()
data0 = load_yaml_json("researchurls.json", raw_data0)
assert isinstance(data0, list) and isinstance(data0[0], NestedDict)
task0 = PropertyRecord.load_from_json(filename="researchurls000.json",
source=raw_data0,
org=org,
file_property_type="URL")
data = task0.to_dict()
raw_data = json.dumps(data, cls=JSONEncoder)
task = PropertyRecord.load_from_json(filename="researchurls001.json",
source=raw_data,
org=org,
file_property_type="URL")
assert len(data0) == len(task.to_dict()["records"])
def models(testdb):
Organisation.insert_many((dict(name="Organisation #%d" % i,
tuakiri_name="Organisation #%d" % i,
orcid_client_id="client-%d" % i,
orcid_secret="secret-%d" % i,
confirmed=(i % 2 == 0))
for i in range(10))).execute()
User.insert_many(
(dict(name="Test User #%d" % i,
first_name="Test_%d" % i,
last_name="User_%d" % i,
email="user%d@org%d.org.nz" % (i, i * 4 % 10),
confirmed=(i % 3 != 0),
roles=Role.SUPERUSER if i % 42 == 0 else Role.ADMIN if i %
13 == 0 else Role.RESEARCHER) for i in range(60))).execute()
User.insert_many((dict(name="Test User with ORCID ID 'ABC-123' #%d" % i,
orcid="ABC-123",
first_name="Test_%d" % i,
last_name="User_%d" % i,
email="user_the_same_id_%d@org%d.org.nz" % (i, i),
confirmed=True,
organisation=(i + 1),
roles=Role.RESEARCHER)
for i in range(3))).execute()
UserOrg.insert_many(
dict(user=u.id, org=u.organisation_id)
for u in User.select().where(User.orcid == "ABC-123")).execute()
UserOrg.insert_many(
(dict(is_admin=((u + o) % 23 == 0), user=u, org=o)
for (u, o) in product(range(2, 60, 4), range(2, 10)))).execute()
UserOrg.insert_many(
(dict(is_admin=True, user=43, org=o) for o in range(1, 11))).execute()
OrcidToken.insert_many((dict(user=User.get(id=1),
org=Organisation.get(id=1),
scopes="/read-limited",
access_token="Test_%d" % i)
for i in range(60))).execute()
UserOrgAffiliation.insert_many((dict(user=User.get(id=1),
organisation=Organisation.get(id=1),
department_name="Test_%d" % i,
department_city="Test_%d" % i,
role_title="Test_%d" % i,
path="Test_%d" % i,
put_code="%d" % i)
for i in range(30))).execute()
Task.insert_many((dict(org=Organisation.get(id=1),
created_by=User.get(id=1),
updated_by=User.get(id=1),
filename="Test_%d" % i,
task_type=0) for i in range(30))).execute()
AffiliationRecord.insert_many((dict(is_active=False,
task=Task.get(id=1),
put_code=90,
external_id="Test_%d" % i,
status="Test_%d" % i,
first_name="Test_%d" % i,
last_name="Test_%d" % i,
email="Test_%d" % i,
orcid="123112311231%d" % i,
organisation="Test_%d" % i,
affiliation_type="Test_%d" % i,
role="Test_%d" % i,
department="Test_%d" % i,
city="Test_%d" % i,
state="Test_%d" % i,
country="Test_%d" % i,
disambiguated_id="Test_%d" % i,
disambiguation_source="Test_%d" % i)
for i in range(10))).execute()
PropertyRecord.insert_many((dict(type="URL",
is_active=False,
task=Task.get(id=1),
put_code=90,
status="Test_%d" % i,
first_name="Test_%d" % i,
last_name="Test_%d" % i,
email="Test_%d" % i,
orcid="123112311231%d" % i,
name="Test_%d" % i,
value="Test_%d" % i,
visibility="Test_%d" % i,
display_index=i)
for i in range(10))).execute()
PropertyRecord.insert_many((dict(type="NAME",
is_active=False,
task=Task.get(id=1),
put_code=90,
status="Test_%d" % i,
first_name="Test_%d" % i,
last_name="Test_%d" % i,
email="Test_%d" % i,
orcid="123112311231%d" % i,
value="Test_%d" % i,
visibility="Test_%d" % i,
display_index=i)
for i in range(10))).execute()
PropertyRecord.insert_many((dict(type="KEYWORD",
is_active=False,
task=Task.get(id=1),
put_code=90,
status="Test_%d" % i,
first_name="Test_%d" % i,
last_name="Test_%d" % i,
email="Test_%d" % i,
orcid="123112311231%d" % i,
value="Test_%d" % i,
visibility="Test_%d" % i,
display_index=i)
for i in range(10))).execute()
FundingRecord.insert_many(
(dict(task=Task.get(id=1),
title="Test_%d" % i,
translated_title="Test_%d" % i,
translated_title_language_code="Test_%d" % i,
type="Test_%d" % i,
organization_defined_type="Test_%d" % i,
short_description="Test_%d" % i,
amount="Test_%d" % i,
currency="Test_%d" % i,
org_name="Test_%d" % i,
city="Test_%d" % i,
region="Test_%d" % i,
country="Test_%d" % i,
disambiguated_id="Test_%d" % i,
disambiguation_source="Test_%d" % i,
is_active=False,
status="Test_%d" % i) for i in range(10))).execute()
record = FundingRecord.get()
FundingContributor.insert_many((dict(record=record,
orcid="123112311231%d" % i,
name="Test_%d" % i,
role="Test_%d" % i)
for i in range(10))).execute()
FundingInvitee.insert_many((dict(record=record,
orcid="123112311231%d" % i,
first_name="Test_%d" % i,
last_name="Test_%d" % i,
put_code=i,
status="Test_%d" % i,
identifier="%d" % i,
visibility="Test_%d" % i,
email="Test_%d" % i)
for i in range(10))).execute()
ExternalId.insert_many((dict(record=record,
type="Test_%d" % i,
value="Test_%d" % i,
url="Test_%d" % i,
relationship="Test_%d" % i)
for i in range(10))).execute()
task = Task.get()
PeerReviewRecord.insert_many(
(dict(task=task,
review_group_id="issn:1212_%d" % i,
reviewer_role="reviewer_%d" % i,
review_url="xyz_%d" % i,
review_type="REVIEW_%d" % i,
subject_external_id_type="doi_%d" % i,
subject_external_id_value="1212_%d" % i,
subject_external_id_url="url/SELF_%d" % i,
subject_external_id_relationship="SELF_%d" % i,
subject_container_name="Journal title_%d" % i,
subject_type="JOURNAL_ARTICLE_%d" % i,
subject_name_title="name_%d" % i,
subject_name_subtitle="subtitle_%d" % i,
subject_name_translated_title_lang_code="en",
subject_name_translated_title="sdsd_%d" % i,
subject_url="url_%d" % i,
convening_org_name="THE ORGANISATION_%d" % i,
convening_org_city="auckland_%d" % i,
convening_org_region="auckland_%d" % i,
convening_org_country="nz_%d" % i,
convening_org_disambiguated_identifier="123_%d" % i,
convening_org_disambiguation_source="1212_%d" % i,
is_active=False) for i in range(10))).execute()
record = PeerReviewRecord.get()
PeerReviewExternalId.insert_many((dict(record=record,
type="Test1_%d" % i,
value="Test1_%d" % i,
url="Test1_%d" % i,
relationship="Test1_%d" % i)
for i in range(10))).execute()
PeerReviewInvitee.insert_many((dict(record=record,
orcid="1231123112311%d" % i,
first_name="Test1_%d" % i,
last_name="Test1_%d" % i,
put_code=i,
status="Test1_%d" % i,
identifier="1%d" % i,
visibility="PUBLIC",
email="Test1_%d" % i)
for i in range(10))).execute()
WorkRecord.insert_many((dict(task=task,
title="Test_%d" % i,
subtitle="Test_%d" % i,
translated_title="Test_%d" % i,
translated_title_language_code="Test_%d" % i,
journal_title="Test_%d" % i,
short_description="Test_%d" % i,
citation_type="Test_%d" % i,
citation_value="Test_%d" % i,
type="Test_%d" % i,
url="Test_%d" % i,
language_code="Test_%d" % i,
country="Test_%d" % i,
is_active=False,
status="Test_%d" % i)
for i in range(10))).execute()
record = WorkRecord.get()
WorkContributor.insert_many((dict(record=record,
orcid="123112311231%d" % i,
name="Test_%d" % i,
contributor_sequence="%d" % i,
role="Test_%d" % i)
for i in range(10))).execute()
WorkExternalId.insert_many((dict(record=record,
type="Test_%d" % i,
value="Test_%d" % i,
url="Test_%d" % i,
relationship="Test_%d" % i)
for i in range(10))).execute()
WorkInvitee.insert_many((dict(record=record,
orcid="123112311231%d" % i,
first_name="Test_%d" % i,
last_name="Test_%d" % i,
put_code=i,
status="Test_%d" % i,
identifier="%d" % i,
visibility="Test_%d" % i,
email="Test_%d" % i)
for i in range(10))).execute()
yield testdb
def test_test_database(models):
"""Test of the consitency of the test database."""
assert Organisation.select().count() == 10
assert User.select().count() == 63
assert OrcidToken.select().count() == 60
assert AffiliationRecord.select().count() == 10
assert FundingRecord.select().count() == 10
assert FundingContributor.select().count() == 10
assert FundingInvitee.select().count() == 10
assert ExternalId.select().count() == 10
assert WorkRecord.select().count() == 10
assert WorkContributor.select().count() == 10
assert WorkExternalId.select().count() == 10
assert WorkInvitee.select().count() == 10
assert PeerReviewRecord.select().count() == 10
assert PeerReviewExternalId.select().count() == 10
assert PeerReviewInvitee.select().count() == 10
assert PropertyRecord.select().where(
PropertyRecord.type == "URL").count() == 10
assert PropertyRecord.select().where(
PropertyRecord.type == "NAME").count() == 10
assert PropertyRecord.select().where(
PropertyRecord.type == "KEYWORD").count() == 10
assert Task.select().count() == 30
assert UserOrgAffiliation.select().count() == 30
assert User.get(id=43).admin_for.count() == 10
assert User.get(id=1).admin_for.count() == 0
assert User.get(id=42).admin_for.count() > 0
assert User.get(id=2).organisations.count() > 0
assert Organisation.get(id=1).admins.count() == 1
assert Organisation.get(id=5).users.count() > 0
assert Organisation.get(id=5).admins.count() > 0
assert User.select().where(User.orcid == User.get(
email="*****@*****.**").orcid).count() == 3
assert len(User.get(email="*****@*****.**").org_links) == 3
user = User.get(email="*****@*****.**")
available_organisations = user.available_organisations
assert available_organisations.count() == 10
admin = User.create(email="*****@*****.**",
organisation=user.organisation,
confirmed=True,
first_name="TEST",
last_name="ADMIN",
roles=Role.ADMIN)
ui = UserInvitation.create(email=user.email,
invitee=user,
inviter=admin,
token="TOKEN-123")
admin.delete_instance()
ui = UserInvitation.get(ui.id)
assert ui.inviter_id is None
user.delete_instance()
assert not UserInvitation.select().where(
UserInvitation.id == ui.id).exists()
org = Organisation.select().limit(1).first()
user = User.select().limit(1).first()
ot = OrcidToken.create(user=user, org=org, scopes="S1,S2,S3")
def test_create_or_update_property_record(app, mocker):
"""Test create or update researcher keyword, researcher url, other name and country"""
mocker.patch("orcid_hub.utils.send_email", send_mail_mock)
mocker.patch(
"orcid_api_v3.api.DevelopmentMemberAPIV30Api.create_keywordv3",
create_or_update_fund_mock)
mocker.patch(
"orcid_api_v3.api.DevelopmentMemberAPIV30Api.create_researcher_urlv3",
create_or_update_fund_mock)
mocker.patch(
"orcid_api_v3.api.DevelopmentMemberAPIV30Api.create_other_namev3",
create_or_update_fund_mock)
mocker.patch(
"orcid_api_v3.api.DevelopmentMemberAPIV30Api.create_addressv3",
create_or_update_fund_mock)
mocker.patch("orcid_hub.orcid_client.MemberAPIV3.get_record",
return_value=get_profile())
org = app.data["org"]
u = User.create(email="*****@*****.**",
name="TEST USER",
roles=Role.RESEARCHER,
orcid="12344",
confirmed=True,
organisation=org)
UserOrg.create(user=u, org=org)
OrcidToken.create(user=u,
org=org,
scopes="/read-limited,/person/update",
access_token="Test_token")
t = Task.create(id=12,
org=org,
filename="xyz.json",
created_by=u,
updated_by=u,
task_type=TaskType.PROPERTY)
PropertyRecord.create(task=t,
type="KEYWORD",
is_active=True,
status="email sent",
first_name="Test",
last_name="Test",
email="*****@*****.**",
visibility="PUBLIC",
value="dummy name",
display_index=1)
PropertyRecord.create(task=t,
type="COUNTRY",
is_active=True,
status="email sent",
first_name="Test",
last_name="Test",
email="*****@*****.**",
visibility="PUBLIC",
value="IN",
display_index=1)
PropertyRecord.create(task=t,
type="URL",
is_active=True,
status="email sent",
first_name="Test",
last_name="Test",
email="*****@*****.**",
visibility="PUBLIC",
name="url name",
value="https://www.xyz.com",
display_index=1)
PropertyRecord.create(task=t,
type="NAME",
is_active=True,
status="email sent",
first_name="Test",
last_name="Test",
email="*****@*****.**",
visibility="PUBLIC",
value="dummy name",
display_index=1)
UserInvitation.create(invitee=u,
inviter=u,
org=org,
task=t,
email="*****@*****.**",
token="xyztoken")
utils.process_property_records()
keyword_record = PropertyRecord.get(email="*****@*****.**",
type="KEYWORD")
assert 12399 == keyword_record.put_code
assert "12344" == keyword_record.orcid
address_record = PropertyRecord.get(email="*****@*****.**",
type="COUNTRY")
assert 12399 == address_record.put_code
assert "12344" == address_record.orcid
url_record = PropertyRecord.get(email="*****@*****.**",
type="URL")
assert 12399 == url_record.put_code
assert "12344" == url_record.orcid
other_name_record = PropertyRecord.get(email="*****@*****.**",
type="NAME")
assert 12399 == other_name_record.put_code
assert "12344" == other_name_record.orcid