def test_get_registration(OSFCore_get):
osf = OSF()
project = osf.project('f3szh')
calls = [call('https://api.osf.io/v2//guids/f3szh/'), call('https://api.osf.io/v2//registrations/f3szh/')]
OSFCore_get.assert_has_calls(calls)
assert isinstance(project, Project)
def test_project(project_list, length):
def response(url, *args, **kwargs):
data = {
"data": {
"relationships": {
"nodes": {
"links": {
"related": {
"href": user_nodes_url
}
}
}
}
}
}
print(url)
if url == user_me_url:
return FakeResponse(200, data)
else:
return FakeResponse(200, {"data": project_list})
OSFCore_get.side_effect = response
osf = OSF()
osf.login("*****@*****.**", "secret_password")
projects = osf.projects()
calls = [call(user_me_url), call(user_nodes_url)]
OSFCore_get.assert_has_calls(calls)
assert isinstance(projects, list)
assert len(projects) == length
for index, proj in enumerate(projects):
assert isinstance(proj, Project)
assert proj.id == project_list[index]["data"]["id"]
def test_get_project_with_endpoint(OSFCore_get):
osf = OSF(base_url='https://api.test.osf.io/v2/')
project = osf.project('f3szh')
calls = [call('https://api.test.osf.io/v2//guids/f3szh/'), call('https://api.test.osf.io/v2//nodes/f3szh/')]
OSFCore_get.assert_has_calls(calls)
assert isinstance(project, Project)
def test_create_project(OSFCore_post):
osf = OSF()
attr = project_node["data"]["attributes"]
project = osf.create_project(attr["title"],
attr["category"],
description=attr["description"])
calls = [
call(
"https://api.osf.io/v2/nodes/",
json={
"data": {
"type": "nodes",
"attributes": {
"title": "Preprint Citations Test",
"category": "project",
"description": "this is a test for preprint citations",
"tags": [],
},
}
},
headers={"Content-Type": "application/json"},
)
]
OSFCore_post.assert_has_calls(calls)
assert isinstance(project, Project)
def test_failed_get_project(OSFCore_get):
osf = OSF()
with pytest.raises(RuntimeError):
osf.project('f3szh')
OSFCore_get.assert_called_once_with(
'https://api.osf.io/v2//nodes/f3szh/'
)
def test_get_project(OSFCore_get):
osf = OSF()
project = osf.project('f3szh')
OSFCore_get.assert_called_once_with(
'https://api.osf.io/v2//nodes/f3szh/'
)
assert isinstance(project, Project)
def test_get_fake(OSFCore_get):
osf = OSF()
with pytest.raises(OSFException) as exc:
osf.project('f3szh')
assert exc.value.args[
0] == 'f3szh is unrecognized type fakes. Clone supports projects and registrations'
OSFCore_get.assert_called_once_with('https://api.osf.io/v2//guids/f3szh/')
def test_has_auth():
osf = OSF()
assert not osf.has_auth
osf = OSF(username='******', password='******')
assert osf.has_auth
osf = OSF(token='0123456789abcd')
assert osf.has_auth
def test_get_project(OSFCore_get):
osf = OSF()
project = osf.project("f3szh")
calls = [
call("https://api.osf.io/v2/guids/f3szh/"),
call("https://api.osf.io/v2/nodes/f3szh/"),
]
OSFCore_get.assert_has_calls(calls)
assert isinstance(project, Project)
def test_delete_project(OSFCore_delete, OSFCore_get):
osf = OSF()
project = osf.project("f3szh")
calls = [call("https://api.osf.io/v2/nodes/f3szh/")]
OSFCore_get.assert_has_calls(calls)
project.delete()
calls = [call("https://api.osf.io/v2/nodes/f3szh/")]
OSFCore_delete.assert_has_calls(calls)
def test_project_metadata_only_mutable(OSFCore_get):
osf = OSF()
project = osf.project("f3szh")
md = project.metadata(only_mutable=True)
data = project_node["data"]["attributes"]
assert data["title"] == md["title"]
assert data["description"] == md["description"]
assert data["category"] == md["category"]
assert data["tags"] == md["tags"]
assert data["public"] == md["public"]
def test_project_metadata(OSFCore_get):
osf = OSF()
project = osf.project("f3szh")
md = project.metadata()
data = project_node["data"]["attributes"]
assert data["title"] == md["title"]
assert data["date_created"] == md["date_created"]
assert data["date_modified"] == md["date_modified"]
assert data["description"] == md["description"]
assert data["category"] == md["category"]
assert data["tags"] == md["tags"]
assert data["public"] == md["public"]
def check_api_key(*args, **kwargs):
g.zenodo = None
try:
req = request.get_json(force=True, cache=True)
except:
req = request.form.to_dict()
try:
service, userId, apiKey = Util.parseUserId(req.get("userId"))
except:
apiKey = Util.loadToken(req.get("userId"), "port-openscienceframework").access_token
logger.debug("req data: {}".format(req))
if apiKey is None:
logger.error("apiKey or userId not found.")
abort(401)
logger.debug("found apiKey")
g.osf = OSF(
token=apiKey,
address=os.getenv(
"OPENSCIENCEFRAMEWORK_API_ADDRESS", "https://api.test.osf.io/v2"
),
)
return api_method(*args, **kwargs)
def test_create_osf_export(path):
ds = Dataset(path).create(force=True)
ds.save()
create_results = ds.create_sibling_osf(
title="CI dl-create",
# do not create a git-remote
mode="exportonly")
assert_result_count(create_results,
1,
status='ok',
type='dataset',
name='osf-storage',
path=ds.path)
# if we got here, we created something at OSF;
# make sure, we clean up afterwards
try:
# for now just run an export and make sure it doesn't fail
ds.repo.call_git(['annex', 'export', 'HEAD', '--to', 'osf-storage'])
finally:
# clean remote end:
cred = get_credentials(allow_interactive=False)
osf = OSF(**cred)
delete_node(osf.session, create_results[0]['id'])
class OSFClient:
def __init__(self, username, password, project):
self.osf = OSF(username=username, password=password)
self.project = self.osf.project(project)
def uploadFile(self, folder, path):
try:
storage = self.project.storage()
storage.create_folder(folder, exist_ok=True)
with open(path, 'rb') as f:
storage.create_file(folder + '/' + os.path.basename(path), f)
except Exception as ex:
logging.error(ex)
def uploadWorker(self, buf):
while True:
item = buf.get()
folder = item.get('query')
path = item.get('path')
logging.info("Uploading from {0} to {1}...".format(path, folder))
self.uploadFile(folder, path)
buf.task_done()
logging.info('Done.')
def prepare(self):
""""""
node_id = self.annex.getconfig('node')
if not node_id:
# fall back on outdated 'project' parameter, which could be
# just the node ID or a full URL to a project
node_id = posixpath.basename(
urlparse(self.annex.getconfig('project')).path.strip(
posixpath.sep))
if not node_id:
raise RemoteError('Could not determine OSF node ID')
try:
# make use of DataLad's credential manager for a more convenient
# out-of-the-box behavior
from datalad_osf.utils import get_credentials
# we must stay non-interactive, because this is running inside
# git-annex's special remote protocal
creds = get_credentials(allow_interactive=False)
except ImportError as e:
# whenever anything goes wrong here, stay clam and fall back
# on envvars.
# we want this special remote to be fully functional without
# datalad
creds = dict(
username=os.environ.get('OSF_USERNAME', None),
password=os.environ.get('OSF_PASSWORD', None),
token=os.environ.get('OSF_TOKEN', None),
)
# next one just sets up the stage, no requests performed yet, hence
# no error checking needed
# supply both auth credentials, so osfclient can fall back on user/pass
# if needed
osf = OSF(**creds)
# next one performs initial auth
try:
self.node = osf.project(node_id)
except Exception as e:
# we need to raise RemoteError() such that PREPARE-FAILURE
# is reported, sadly that doesn't give users any clue
# TODO support datalad logging here
raise RemoteError('Failed to obtain OSF node handle: {}'.format(e))
# which storage to use, defaults to 'osfstorage'
# TODO a node could have more than one? Make parameter to select?
self.storage = self.node.storage()
def test_project_metadata_jsonld(OSFCore_get):
osf = OSF()
project = osf.project("f3szh")
md = project.metadata(jsonld=True)
data = project_node["data"]["attributes"]
assert data["title"] == md[osf_to_jsonld["title"]]
assert data["description"] == md[osf_to_jsonld["description"]]
assert data["category"] == md[osf_to_jsonld["category"]]
assert data["tags"] == md[osf_to_jsonld["tags"]]
assert data["public"] == md[osf_to_jsonld["public"]]
assert data["date_created"] == md[osf_to_jsonld["date_created"]]
assert data["date_modified"] == md[osf_to_jsonld["date_modified"]]
with pytest.raises(KeyError):
md["title"]
md["description"]
def test_create_osf_simple(path):
ds = Dataset(path).create(force=True)
ds.save()
file1 = Path('ds') / "file1.txt"
create_results = ds.create_sibling_osf(name="osf")
assert_result_count(create_results, 2, status='ok')
assert_result_count(create_results,
1,
status='ok',
type='dataset',
name="osf-storage",
path=ds.path)
assert_result_count(create_results,
1,
status='ok',
type='sibling',
name="osf",
path=ds.path)
# if we got here, we created something at OSF;
# make sure, we clean up afterwards
try:
# special remote is configured:
remote_log = ds.repo.call_git(
['cat-file', 'blob', 'git-annex:remote.log'])
assert_in("node={}".format(create_results[0]['id']), remote_log)
# copy files over
ds.repo.copy_to('.', "osf-storage")
whereis = ds.repo.whereis(str(file1))
here = ds.config.get("annex.uuid")
# files should be 'here' and on remote end:
assert_equal(len(whereis), 2)
assert_in(here, whereis)
# drop content here
ds.drop('.')
whereis = ds.repo.whereis(str(file1))
# now on remote end only
assert_equal(len(whereis), 1)
assert_not_in(here, whereis)
# and get content again from remote:
ds.get('.')
whereis = ds.repo.whereis(str(file1))
assert_equal(len(whereis), 2)
assert_in(here, whereis)
finally:
# clean remote end:
cred = get_credentials(allow_interactive=False)
osf = OSF(**cred)
delete_node(osf.session, create_results[0]['id'])
def test_update_project(OSFCore_put, OSFCore_get):
osf = OSF()
attr = project_node["data"]["attributes"]
attr["title"] = "Long long title"
project = osf.project("f3szh")
calls = [call("https://api.osf.io/v2/nodes/f3szh/")]
OSFCore_get.assert_has_calls(calls)
project.title = attr["title"]
project.update()
calls = [
call(
"https://api.osf.io/v2/nodes/f3szh/",
data=
'{"data": {"type": "nodes", "id": "f3szh", "attributes": {"category": "project", "description": "this is a test for preprint citations", "title": "Long long title", "public": true, "tags": ["qatest"]}}}',
)
]
OSFCore_put.assert_has_calls(calls)
assert isinstance(project, Project)
def with_node(f, osf_session=None, title=None, category="data"):
# we don't want the test hanging, no interaction
creds = get_credentials(allow_interactive=False)
# supply all credentials, so osfclient can fall back on user/pass
# if needed
osf = OSF(**creds)
@wraps(f)
def new_func(*args, **kwargs):
node_id, proj_url = create_node(
osf.session,
'Temporary DataLad CI project: {}'.format(title),
category=category)
try:
return f(*(args + (node_id, )), **kwargs)
finally:
delete_node(osf.session, node_id)
return new_func
def _get_osf_api(self):
""""""
try:
# make use of DataLad's credential manager for a more convenient
# out-of-the-box behavior
from datalad_osf.utils import get_credentials
# we should be able to allow interactive
creds = get_credentials(allow_interactive=True)
except ImportError as e:
# whenever anything goes wrong here, stay clam and fall back
# on envvars.
# we want this special remote to be fully functional without
# datalad
creds = dict(
username=os.environ.get('OSF_USERNAME', None),
password=os.environ.get('OSF_PASSWORD', None),
token=os.environ.get('OSF_TOKEN', None),
)
# next one just sets up the stage, no requests performed yet, hence
# no error checking needed
# supply both auth credentials, so osfclient can fall back on user/pass
# if needed
return OSF(**creds)
def test_basic_auth(session_basic_auth):
OSF("*****@*****.**", "secret_password")
session_basic_auth.assert_called_with("*****@*****.**", "secret_password")
def test_login_token(session_token_auth):
osf = OSF()
assert not session_token_auth.called
osf.login(token="asdfg")
session_token_auth.assert_called_with("asdfg")
def test_login_username_password(session_basic_auth):
osf = OSF()
assert not session_basic_auth.called
osf.login('*****@*****.**', 'secret_password')
session_basic_auth.assert_called_with('*****@*****.**', 'secret_password')
def test_token_auth(session_token_auth):
OSF(token='asdfg')
session_token_auth.assert_called_with('asdfg')
def test_basic_auth(session_basic_auth):
OSF('*****@*****.**', 'secret_password')
session_basic_auth.assert_called_with('*****@*****.**', 'secret_password')
def connect() -> Storage:
"""Connect to the seed selection OSF project."""
return OSF().project(_PROJECT).storage()
def test_address_parameter():
address = "https://api.test.osf.io/v2"
assert OSF(address=address).session.base_url == address
assert OSF(address=address).session.base_url != "https://api.osf.io/v2"
def test_failed_get_project(OSFCore_get):
osf = OSF()
with pytest.raises(RuntimeError):
osf.project("f3szh")
OSFCore_get.assert_called_once_with("https://api.osf.io/v2/guids/f3szh/")
def test_token_auth(session_token_auth):
OSF(token="asdfg")
session_token_auth.assert_called_with("asdfg")