def accdb_to_csv(directory, get_out, warn, file_type, get_in):
meta.write_logs(warn, 'DEBUG', 'accdb_to_csv','Iniciando processo', debug=DEBUG)
get_out = directory + get_out
meta.write_logs(warn, 'INFO', 'Arquivo encontrado ' + file_type, 'Formato Micrsoft Access (mdb,accdb).')
for table in mdb.list_tables(get_in):
try:
meta.write_logs(warn, 'INFO', 'Tabela ' + table, 'Tabela encontrado dentro do arquivo.')
csv.access_to_csv(get_in, get_out, table)
meta.write_logs(warn, 'INFO', 'Chave ùnica criada ' + get_out + '_' + table + '.csv','SHA256(' + meta.md5_hash(get_out + '_temp_' + table + '.csv') + ')')
except:
meta.write_logs(warn, 'ERROR','accdb_to_csv - Falha ao exportar tabela ' + table, 'Erro de leitura na tabela')
meta.write_logs(warn, 'DEBUG', 'accdb_to_csv','Finalizando processo', debug=DEBUG)
def ParseSynergiDatabase(self):
"""
Use Pandas Access to convert the MDB tables to Pandas DataFrames.
"""
print("Opening synergie database - ", self.paths["Synergi File"])
table_list = mdb.list_tables(self.paths["Synergi File"])
table_list_warehouse = []
if "warehouse" in self.paths:
print("Opening warehouse database - ", self.paths["warehouse"])
table_list_warehouse = mdb.list_tables(self.paths["warehouse"])
for table in table_list:
self.SynergiDictionary[table] = self.ToLowerCase(
mdb.read_table(self.paths["Synergi File"], table)
)
for table in table_list_warehouse:
self.SynergiDictionary[table] = self.ToLowerCase(
mdb.read_table(self.paths["warehouse"], table)
)
return
def get_mdb_data(self, payload):
'''
Returns list of Entity object(s) (str,dataframe) from a successful extraction
Arguments:
payload -- payload object (str,binary)
'''
# TODO: find a way to directly pass byteio to reading utility without writing to disk
try:
# Write to bytes to disk
open(payload.filename, 'wb').write(payload.data.getvalue())
# Get database schema
mdb_schema = pandas_access.read_schema(payload.filename)
# Get attributes that are of integer type
integer_attributes = self.get_attributes_by_data_type(
mdb_schema, 'Long Integer')
# Declare entity dict
entity_dict = dict()
# Get list of table from database
table_list = pandas_access.list_tables(payload.filename)
# Update progress bar job count
self.job_count += len(table_list)
self.pbar.total = self.job_count
# Iterate through each table in database
for tbl in table_list:
self.logger.debug('Extracting table: \'%s\' from file: %s...',
tbl, payload.filename)
# Issue: Default pandas integer type is not nullable - null values in integer column causes read error
# Workaround: Read integer as Int64 (pandas nullable integer type in pandas)
dtype_input = {
attribute: 'Int64'
for attribute in integer_attributes[tbl]
}
df = pandas_access.read_table(payload.filename,
tbl,
dtype=dtype_input)
entity_dict.update({tbl: df})
# update progress bar
self.pbar.update()
return entity_dict
finally:
self.logger.debug('Removing intermediate file: %s...',
payload.filename)
utils.silentremove(payload.filename)
def from_SQLT(args):
sql_table = args.sql_table
if sql_table == None or sql_table == "":
return "MUST SUPPLY --sql_table"
sql_type = args.sql_kind.lower()
if sql_type == "psql":
return sql_type + " Coming Soon"
elif sql_type == "msql":
return sql_type + " Coming Soon"
elif sql_type == "sqll":
return sql_type + " Coming Soon"
elif sql_type == "mdb":
sql_file = args.sql_file
if sql_file == None or sql_file == "":
return "MUST SUPPLY --sql_file"
try:
tables = mdb.list_tables(sql_file)
if from_table not in tables:
return "TABLE NOT FOUND. Available Tables:\n\t" + "\n\t".join(
tables)
df = mdb.read_table(sql_file, from_table)
except:
traceback.print_exc()
return "ERROR"
else:
return "UNSUPPORTED SQL. Available Kinds: PSQL (PostGreSQL), MSQL (MySQL), MDB (Access DB), SQLL (SQLite)"
return df
# Input files should be (*.mdb or *.accdb)
inputfile = "/lss/research/itrns-otohpc/CrashTools/NonMotoristCrashTool/working.mdb"
outputfile = "/lss/research/itrns-otohpc/CrashTools/NonMotoristCrashTool/Output.csv"
outputdir = "/lss/research/itrns-otohpc/CrashTools/NonMotoristCrashTool/"
outputcl = "/lss/research/itrns-otohpc/CrashTools/NonMotoristCrashTool/CRASH_LEVEL.csv"
outputvl = "/lss/research/itrns-otohpc/CrashTools/NonMotoristCrashTool/VEHICLE_LEVEL.csv"
outputpl = "/lss/research/itrns-otohpc/CrashTools/NonMotoristCrashTool/PERSON_LEVEL.csv"
# In[2]:
import pandas_access as mdb
db_filename = inputfile
# Listing the tables.
for tbl in mdb.list_tables(db_filename):
print(tbl)
# import all the necessary libraries
import csv
import pyodbc
import pandas as pd
import numpy as np
# In[4]:
dfcl = mdb.read_table(db_filename, table_name="CRASH_LEVEL")
dfcl.to_csv(outputcl, index=False)
# In[5]:
dfvl = mdb.read_table(db_filename, table_name="VEHICLE_LEVEL")
dfvl.to_csv(outputcl, index=False)
while attempts < 3:
try:
response = urlopen(
'http://static.data.gov.hk/td/routes-and-fares/RSTOP_BUS.mdb',
timeout=10)
content = response.read()
with open(expanduser('~/Desktop/RSTOP_BUS.mdb'), 'wb') as f:
f.write(content)
break
except URLError as e:
if attempts == 2:
exit(1)
attempts += 1
df = mdb.read_table(expanduser('~/Desktop/RSTOP_BUS.mdb'),
mdb.list_tables(expanduser('~/Desktop/RSTOP_BUS.mdb'))[0])
df.drop_duplicates(subset=['ROUTE_ID', 'ROUTE_SEQ', 'STOP_SEQ'],
keep='last',
inplace=True)
#df.fillna(-1, inplace=True)
conn = pymssql.connect(server='192.168.13.60',
user='******',
password='******',
database='DWHRMS_DEMO')
last = len(df) - 1
sql = 'DELETE FROM [t_MobBusStops]'
cursor = conn.cursor()
cursor.execute(sql)
conn.commit()
folder = expanduser('~/Desktop/rstops')
def read_tables(db_path):
result = []
for tbl in mdb.list_tables(db_path, encoding="utf-8"):
result.append(tbl)
return result
while attempts < 3:
try:
response = urlopen(
'http://static.data.gov.hk/td/routes-and-fares/ROUTE_GMB.mdb',
timeout=10)
content = response.read()
with open(expanduser('~/Desktop/ROUTE_GMB.mdb'), 'wb') as f:
f.write(content)
break
except URLError as e:
if attempts == 2:
exit(1)
attempts += 1
df = mdb.read_table(expanduser('~/Desktop/ROUTE_GMB.mdb'),
mdb.list_tables(expanduser('~/Desktop/ROUTE_GMB.mdb'))[0])
#df.drop_duplicates(subset=['ROUTE_ID', 'ROUTE_SEQ', 'STOP_SEQ'], keep='last', inplace=True)
#df.fillna(-1, inplace=True)
conn = pymssql.connect(server=r'192.168.9.75\sql2012',
user='******',
password='******',
database='DWHRMS_DEMO')
last = len(df) - 1
sql = 'DELETE FROM [t_MobMinibusFares]'
cursor = conn.cursor()
cursor.execute(sql)
conn.commit()
for i, r in df.iterrows():
if i % 1000 == 0:
sql = f'INSERT INTO [t_MobMinibusFares] ([Route ID], [District], [Route Name], [Source zh-hk], [Source zh-cn], [Source en-us], [Dest zh-hk], [Dest zh-cn], [Dest en-us], [Fare]) \n'
else:
while attempts < 3:
try:
response = urlopen(
'http://static.data.gov.hk/td/routes-and-fares/FARE_BUS.mdb',
timeout=10)
content = response.read()
with open(expanduser('~/Desktop/FARE_BUS.mdb'), 'wb') as f:
f.write(content)
break
except URLError as e:
if attempts == 2:
exit(1)
attempts += 1
df = mdb.read_table(expanduser('~/Desktop/FARE_BUS.mdb'),
mdb.list_tables(expanduser('~/Desktop/FARE_BUS.mdb'))[0])
df.drop_duplicates(subset=['ROUTE_ID', 'ROUTE_SEQ', 'ON_SEQ', 'OFF_SEQ'],
keep='last',
inplace=True)
#df.fillna(-1, inplace=True)
conn = pymssql.connect(server='192.168.13.60',
user='******',
password='******',
database='DWHRMS_DEMO')
last = len(df) - 1
sql = 'DELETE FROM [t_MobBusFaresSection]'
cursor = conn.cursor()
cursor.execute(sql)
conn.commit()
folder = expanduser('~/Desktop/fares')
# Does what it says on the tin.
# Note that it takes a while to read all the mdb thingies.
# To run pandas_access successfully, install mdbtools through whatever you need.
# -Matt
import pandas
import numpy as np
import pandas_access
DATASET = "./FDOC_January_2017.mdb"
if __name__ == "__main__":
table_list = []
for tablename in pandas_access.list_tables(DATASET):
print(tablename)
table_list.append(tablename)
tables_dict = {}
for table in table_list[0:2]: #doing more makes it take forever.
tables_dict[table] = pandas_access.read_table(DATASET, table)