def resolve_imports(self, resolve=False):
"""
Look over our list of imports and tokenize / parse any that haven't
already been parsed
"""
self.resolve = resolve
# Cyclic imports are kind of painful in Python
import parsing.Parser as Parser
for path in self.imports:
if self.imports[path] is None:
sub, base = self.basepath
subbed_path = path.replace(self.basepath[0], self.basepath[1])
subbed_path = os.path.normpath(subbed_path)
new_ontology = Parser.parse_file(subbed_path, sub, base,
resolve)
new_ontology.basepath = self.basepath
self.imports[path] = new_ontology
def convert_all_clif_files(folder,
output,
resolve,
loc=default_dir,
prefix=default_prefix):
tempfolder = Filemgt.read_config('converters', 'tempfolder')
ignores = [tempfolder]
cl_ending = Filemgt.read_config('cl', 'ending')
logging.getLogger(__name__).info("Traversing folder " + folder)
for directory, subdirs, files in os.walk(folder):
if any(ignore in directory for ignore in ignores):
pass
else:
for single_file in files:
if single_file.endswith(cl_ending):
file = os.path.join(directory, single_file)
logging.getLogger(__name__).info("Found CL file " + file)
ontology = Parser.parse_file(file, prefix, loc, resolve)
convert_single_clif_file(ontology, output, resolve, loc,
prefix)
'--file',
type=str,
help='Clif file',
required=True)
parser.add_argument('-n',
'--noresolve',
action="store_false",
help='Prevent from automatically resolving imports',
default=True)
parser.add_argument('--loc',
type=str,
help='Path to directory containing ontology files',
default=default_dir)
parser.add_argument(
'--prefix',
type=str,
help='String to replace with basepath found in imports',
default=default_prefix)
args = parser.parse_args()
path = os.path.normpath(os.path.join(args.loc, args.file))
ontology = Parser.parse_file(args.file, args.prefix, args.loc,
args.noresolve)
if not (os.path.isfile(path)):
logging.getLogger(__name__).error(
"Attempted to check consistency of non-existent file: " + path)
else:
ontology.check_consistency(resolve=not (args.noresolve))
