def testNextStudyIds(self):
p = _Phylesystem(repos_dict=self.r)
mf = p._growing_shard._id_minting_file
nsi = p._mint_new_study_id()
self.assertEqual(
int(nsi.split('_')[-1]) + 1,
read_as_json(mf)['next_study_id'])
self.assertTrue(nsi.startswith('zz_'))
def testChangedStudies(self):
p = _Phylesystem(repos_dict=self.r)
changed = p.get_changed_studies('2d59ab892ddb3d09d4b18c91470b8c1c4cca86dc')
self.assertEqual(set(['xy_13', 'xy_10']), changed)
changed = p.get_changed_studies('2d59ab892ddb3d09d4b18c91470b8c1c4cca86dc', ['zz_11'])
self.assertEqual(set(), changed)
changed = p.get_changed_studies('2d59ab892ddb3d09d4b18c91470b8c1c4cca86dc', ['zz_112'])
self.assertEqual(set(), changed)
self.assertRaises(ValueError, p.get_changed_studies, 'bogus')
def testChangedStudies(self):
p = _Phylesystem(repos_dict=self.r)
p.pull() # get the full git history
changed = p.get_changed_studies('5f50b669cb4867d39e9a85e7fd1e2aa8e9a3242b')
self.assertEqual({'xy_13', 'xy_10'}, changed)
changed = p.get_changed_studies('5f50b669cb4867d39e9a85e7fd1e2aa8e9a3242b', ['zz_11'])
self.assertEqual(set(), changed)
changed = p.get_changed_studies('5f50b669cb4867d39e9a85e7fd1e2aa8e9a3242b', ['zz_112'])
self.assertEqual(set(), changed)
self.assertRaises(ValueError, p.get_changed_studies, 'bogus')
def testIterateStudies(self):
p = _Phylesystem(repos_dict=self.r)
k = list(p.get_study_ids())
count = 0
for study_id, file_path in p.iter_study_filepaths():
count += 1
self.assertEqual(count, len(k))
count = 0
for study_id, n in p.iter_study_objs():
count += 1
self.assertEqual(count, len(k))
def testIterateStudies(self):
p = _Phylesystem(repos_dict=self.r)
k = list(p.get_study_ids())
count = 0
for study_id, file_path in p.iter_study_filepaths():
count += 1
self.assertEqual(count, len(k))
count = 0
for study_id, n in p.iter_study_objs():
count += 1
self.assertEqual(count, len(k))
def testChangedStudies(self):
p = _Phylesystem(repos_dict=self.r)
changed = p.get_changed_studies(
'2d59ab892ddb3d09d4b18c91470b8c1c4cca86dc')
self.assertEqual(set(['xy_13', 'xy_10']), changed)
changed = p.get_changed_studies(
'2d59ab892ddb3d09d4b18c91470b8c1c4cca86dc', ['zz_11'])
self.assertEqual(set(), changed)
changed = p.get_changed_studies(
'2d59ab892ddb3d09d4b18c91470b8c1c4cca86dc', ['zz_112'])
self.assertEqual(set(), changed)
self.assertRaises(ValueError, p.get_changed_studies, 'bogus')
def testChangedStudies(self):
p = _Phylesystem(repos_dict=self.r)
p.pull() # get the full git history
changed = p.get_changed_studies(
'5f50b669cb4867d39e9a85e7fd1e2aa8e9a3242b')
self.assertEqual({'xy_13', 'xy_10'}, changed)
changed = p.get_changed_studies(
'5f50b669cb4867d39e9a85e7fd1e2aa8e9a3242b', ['zz_11'])
self.assertEqual(set(), changed)
changed = p.get_changed_studies(
'5f50b669cb4867d39e9a85e7fd1e2aa8e9a3242b', ['zz_112'])
self.assertEqual(set(), changed)
self.assertRaises(ValueError, p.get_changed_studies, 'bogus')
def testStudyIndexing(self):
p = _Phylesystem(repos_dict=self.r)
k = list(p._doc2shard_map.keys())
k.sort()
self.assertEqual(k, ['xy_10', 'xy_13', 'zz_11', 'zz_112'])
def testStudyIds(self):
p = _Phylesystem(repos_dict=self.r)
k = list(p.get_study_ids())
k.sort()
self.assertEqual(k, ['xy_10', 'xy_13', 'zz_11', 'zz_112'])
def testURL(self):
p = _Phylesystem(repos_dict=self.r)
self.assertTrue(p.get_public_url('xy_10').endswith('xy_10.json'))
self.assertTrue(p.get_public_url('zz_112').endswith('zz_112.json'))
def testStudyIndexing(self):
p = _Phylesystem(repos_dict=self.r)
k = list(p._study2shard_map.keys())
k.sort()
self.assertEqual(k, ['xy_10', 'xy_13', 'zz_11', 'zz_112'])
def testInit(self):
p = _Phylesystem(repos_dict=self.r)
self.assertEqual(2, len(p._shards))
def get_test_phylesystem():
from peyotl.phylesystem.phylesystem_umbrella import _Phylesystem
r = get_test_repos()
mi = get_test_phylesystem_mirror_info()
mi['push']['remote_map'] = {'GitHubRemote': '[email protected]:mtholder'}
return _Phylesystem(repos_dict=r, mirror_info=mi)
def get_test_phylesystem():
from peyotl.phylesystem.phylesystem_umbrella import _Phylesystem
r = get_test_repos()
mi = get_test_phylesystem_mirror_info()
mi['push']['remote_map'] = {'GitHubRemote': '[email protected]:mtholder'}
return _Phylesystem(repos_dict=r, mirror_info=mi)
def testInit(self):
p = _Phylesystem(repos_dict=self.r)
self.assertEqual(2, len(p._shards))
def testURL(self):
p = _Phylesystem(repos_dict=self.r)
self.assertTrue(p.get_public_url('xy_10').endswith('xy_10.json'))
self.assertTrue(p.get_public_url('zz_112').endswith('zz_112.json'))
def testNextStudyIds(self):
p = _Phylesystem(repos_dict=self.r)
mf = p._growing_shard._id_minting_file
nsi = p._mint_new_study_id()
self.assertEqual(int(nsi.split('_')[-1]) + 1, read_as_json(mf)['next_study_id'])
self.assertTrue(nsi.startswith('zz_'))
def testStudyIds(self):
p = _Phylesystem(repos_dict=self.r)
k = list(p.get_study_ids())
k.sort()
self.assertEqual(k, ['xy_10', 'xy_13', 'zz_11', 'zz_112'])