def test_write_phantom_config():
"""Test writing Phantom config files."""
tmp_file = pathlib.Path('tmp.in')
conf = pc.read_config(test_phantom_file)
conf.write_phantom(tmp_file)
conf = pc.read_config(tmp_file)
assert conf.config == test_data.config
assert conf.header == test_data.header
assert conf.datetime == test_data._datetime
tmp_file.unlink()
def generate_files():
for N in [1, 3]:
pc.parameter_sweep(
filename='dustyshock.setup',
template=pc.read_config(FILE_DIR / f'dustyshock-N_{N}.setup'),
parameters=PARAMETERS,
dummy_parameters=['hfact'],
prefix=f'N_{N}-',
output_dir=OUTPUT_DIR,
)
pc.parameter_sweep(
filename='dustyshock.in',
template=pc.read_config(FILE_DIR / f'dustyshock-N_{N}.in'),
parameters=PARAMETERS,
dummy_parameters=['nx', 'smooth_fac'],
prefix=f'N_{N}-',
output_dir=OUTPUT_DIR,
)
def test_add_value():
"""Testing adding, removing, modifying values."""
conf = pc.read_config(test_phantom_file)
conf.add_variable('new_variable', 999)
conf.add_variable('new_variable',
999,
comment='No comment',
block='New block')
assert conf.config['new_variable'].value == 999
def test_write_toml_config():
"""Test writing TOML config files."""
tmp_file = pathlib.Path('tmp.toml')
conf = pc.read_config(test_phantom_file)
conf.write_toml(tmp_file)
conf = pc.read_toml(tmp_file)
assert conf.variables == test_data.variables
assert conf.values == test_data.values
assert conf.header == test_data.header
assert conf.datetime == test_data._datetime
tmp_file.unlink()
def add_to_header_from_infile(
snapfile: Union[str, Path],
infile: Union[str, Path],
parameters: List[str] = None,
):
"""Add missing values to Phantom snapshot header.
Some values can be missing from the Phantom snapshot header after
conversion from the non-HDF5 file format. These values are
available in the in-file. This function reads the infile and sets
the values in the Phantom-HDF5 snapshot file header.
Parameters
----------
snapfile
The path to the snapshot file.
infile
The path to the in-file.
parameters : optional
A list of strings of parameters to set in the snap header from
the in-file.
"""
try:
import phantomconfig as pc
except ModuleNotFoundError as e:
print('phantom-config unavailable, '
'install with python -m pip install phantomconfig')
raise e
if parameters is None:
parameters = missing_infile_parameters
config = pc.read_config(infile)
logger.info(f'Reading parameters in {infile}')
filename = Path(snapfile).expanduser()
if not filename.is_file():
raise FileNotFoundError('Cannot find snapshot file')
file = h5py.File(filename, mode='r+')
logger.info(f'Opening snapshot file {snapfile}')
for param in parameters:
print(param)
if param in config.config:
logger.info(f'Updating {param} from in-file')
file[f'header/{param}'][()] = config.config[param].value
print(param)
print(file[f'header/{param}'][()])
file.close()
def test_read_phantom_config():
"""Test reading Phantom config files."""
conf = pc.read_config(test_phantom_file)
assert conf.config == test_data.config
assert conf.header == test_data.header
assert conf.datetime == test_data._datetime
def test_change_variable():
"""Test changing a variable."""
conf = pc.read_config(test_phantom_file)
hfact_prev = conf.config['hfact'].value
conf.change_value('hfact', 1.2)
assert conf.config['hfact'].value != hfact_prev
def test_remove_variable():
"""Test removing a variable."""
conf = pc.read_config(test_phantom_file)
conf.remove_variable('dtmax')
assert 'dtmax' not in conf.variables