def test_add_parameters_and_statements(pheno_path, param_new, statement_new, buf_new):
model = Model(pheno_path)
pset = model.parameters
pset.append(param_new)
model.parameters = pset
sset = model.statements
# Insert new statement before ODE system.
new_sset = ModelStatements()
for s in sset:
if isinstance(s, ODESystem):
new_sset.append(statement_new)
new_sset.append(s)
model.statements = new_sset
model.update_source()
rec = (
f'$PK\n'
f'IF(AMT.GT.0) BTIME=TIME\n'
f'TAD=TIME-BTIME\n'
f'TVCL=THETA(1)*WGT\n'
f'TVV=THETA(2)*WGT\n'
f'IF(APGR.LT.5) TVV=TVV*(1+THETA(3))\n'
f'CL=TVCL*EXP(ETA(1))\n'
f'V=TVV*EXP(ETA(2))\n'
f'S1=V\n'
f'{buf_new}\n\n'
)
assert str(model.get_pred_pk_record()) == rec
def test_statements_setter(pheno_path, buf_new, len_expected):
model = Model(pheno_path)
parser = NMTranParser()
statements_new = parser.parse(f'$PRED\n{buf_new}').records[0].statements
assert len(model.statements) == 15
assert len(statements_new) == len_expected
model.statements = statements_new
assert len(model.statements) == len_expected
assert model.statements == statements_new
def test_add_statements(pheno_path, statement_new, buf_new):
model = Model(pheno_path)
sset = model.statements
assert len(sset) == 15
# Insert new statement before ODE system.
new_sset = ModelStatements()
for s in sset:
if isinstance(s, ODESystem):
new_sset.append(statement_new)
new_sset.append(s)
model.statements = new_sset
model.update_source()
assert len(model.statements) == 16
parser = NMTranParser()
stream = parser.parse(str(model))
assert str(model.control_stream) == str(stream)
rec_ref = (
f'$PK\n'
f'IF(AMT.GT.0) BTIME=TIME\n'
f'TAD=TIME-BTIME\n'
f'TVCL=THETA(1)*WGT\n'
f'TVV=THETA(2)*WGT\n'
f'IF(APGR.LT.5) TVV=TVV*(1+THETA(3))\n'
f'CL=TVCL*EXP(ETA(1))\n'
f'V=TVV*EXP(ETA(2))\n'
f'S1=V\n'
f'{buf_new}\n\n'
)
rec_mod = str(model.control_stream.get_records('PK')[0])
assert rec_ref == rec_mod