Ejemplo n.º 1
0
 def __init__(self, registry):
     _LOG.info('Initializing Phycas')
     Phycas.__init__(self)
     self.data_source = 'memory'
     SimpleServer.__init__(self, registry)
     self.registry = registry
     self.trees = []
     self.treesLock = threading.Lock()
     self.curr_tree_pos = None
     self.phycasIDLishMatrix = None
     self.ntax = 0
     self.leafSet = []
     self.serverRefCount = 1
     self.settings = {}
Ejemplo n.º 2
0
 def recordSample(self, cycle, lnL = 0.0):
     #---+----|----+----|----+----|----+----|----+----|----+----|----+----|
     """
     Calls base class version, then stores tree description in list so that
     trees can be supplied when requested.
     """
     Phycas.recordSample(self, cycle, lnL)
     
     t = (cycle + 1, lnL, self.tree.makeNewick())
     _LOG.debug(str(t))
     self.treesLock.acquire()
     try:
         self.trees.append(t)
         if not self.curr_tree_pos:
             self.curr_tree_pos = 0
     finally:
         self.treesLock.release()