def test_reading_from_guide_table(self):
"""Read table"""
root = Newick.Clade()
root.name = "cellular organisms"
#print(root.depths())
inf = open("./test-phyloutil/test1/Pseudozyma-antarctica-1.txt", 'r')
table = util.readTable(inf, header=True)
#print(table)
tree = phyloutil.parseClassificationTable(table)
inf.close()
phyloutil.printTree(tree, sys.stdout)
def test_reading_from_class_table(self):
"""Read table"""
root = Newick.Clade()
root.name = "cellular organisms"
inf = open("./test-phyloutil/test1/Pseudozyma-antarctica-1.txt", 'r')
table = util.readTable(inf, header=True)
#print(table)
tree = phyloutil.parseClassificationTable(table)
inf.close()
#phyloutil.printTree(root, sys.stdout)
termlist = list(tree.get_terminals())
self.assertTrue(termlist[0].name=='Moesziomyces antarcticus T-34')
